Assay Details
Target Gene Details
Entrez Gene ID: | 105370757 |
Gene Name: | uncharacterized LOC105370757 |
Gene Aliases: |
- |
Location: |
Chr.15:32665702-32673065 on Build GRCh38 |
Assay Gene Location: | Within Intron 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
LOC105370757 | NR_135505.1 | |||
BX088994.1 |
Target Gene Details
Entrez Gene ID: | 6447 |
Gene Name: | secretogranin V |
Gene Aliases: |
7B2, P7B2, SGNE1, SgV |
Location: |
Chr.15:32641669-32697097 on Build GRCh38 |
Assay Gene Location: | Within Intron 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SCG5 | NM_001144757.1 | NP_001138229.1 | ||
NM_003020.3 | NP_003011.1 | |||
AK314965.1 | ||||
BC005349.1 | AAH05349.1 | |||
BC093053.1 | AAH93053.1 | |||
BP377248.1 | ||||
CR541824.1 | CAG46623.1 | |||
Y00757.1 | CAA68726.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv456785 | Chr.15:32633875 - 33060788 on Build GRCh38 | Gain | LOC105370757 ARHGAP11A GREM1 FMN1 SCG5 LOC100131315 |
nsv428302 | Chr.15:31646275 - 32694378 on Build GRCh38 | Gain+Loss | OTUD7A ARHGAP11A LOC105370940 ULK4P1 LOC101060588 GOLGA8N GOLGA8O WHAMMP1 LOC105370757 LOC100996255 CHRNA7 GOLGA8K LOC100653133 LOC101928042 SCG5 |
esv2760023 | Chr.15:31474097 - 32694378 on Build GRCh38 | Gain+Loss | OTUD7A ARHGAP11A LOC105370940 ULK4P1 LOC101060588 GOLGA8N GOLGA8O WHAMMP1 LOC105370757 LOC100996255 CHRNA7 GOLGA8K LOC100653133 LOC101928042 SCG5 |
nsv1052620 | Chr.15:32612402 - 34538731 on Build GRCh38 | Gain | GOLGA8B LPCAT4 MIR1233-2 LOC101928134 ARHGAP11A NOP10 GREM1 KATNBL1 NUTM1 EMC4 LOC105370757 TMCO5B PGBD4 MIR1233-1 EMC7 FMN1 LOC101928042 AVEN GOLGA8A SLC12A6 SCG5 RYR3 CHRM5 LOC100131315 |
nsv483039 | Chr.15:32574635 - 32751321 on Build GRCh38 | Gain | LOC105370757 LOC100996255 ARHGAP11A GOLGA8N GREM1 LOC101928042 SCG5 LOC100131315 |
esv3892661 | Chr.15:32393132 - 32776080 on Build GRCh38 | Gain | ARHGAP11A ULK4P1 LOC101060588 GOLGA8N GREM1 GOLGA8O WHAMMP1 LOC105370757 LOC100996255 GOLGA8K FMN1 LOC100653133 LOC101928042 SCG5 LOC100131315 |
esv33337 | Chr.15:31689863 - 34575097 on Build GRCh38 | Gain+Loss | LPCAT4 ARHGAP11A LOC105370940 NOP10 GREM1 GOLGA8O KATNBL1 EMC4 TMCO5B LOC100996255 CHRNA7 GOLGA8K FMN1 LOC101928042 GOLGA8A SCG5 GOLGA8B MIR1233-2 LOC101928134 ULK4P1 LOC101060588 GOLGA8N WHAMMP1 NUTM1 LOC105370757 PGBD4 MIR1233-1 EMC7 LOC100653133 AVEN SLC12A6 RYR3 CHRM5 LOC100131315 |
nsv469587 | Chr.15:32529739 - 32694378 on Build GRCh38 | Loss | LOC105370757 LOC100996255 ARHGAP11A GOLGA8N LOC101928042 SCG5 WHAMMP1 |
esv2422296 | Chr.15:32506737 - 32929014 on Build GRCh38 | Duplication | LOC105370757 LOC100996255 ARHGAP11A GOLGA8N GREM1 FMN1 LOC101928042 SCG5 WHAMMP1 LOC100131315 |
dgv4456n54 | Chr.15:32604149 - 34557061 on Build GRCh38 | Gain | LPCAT4 ARHGAP11A NOP10 GREM1 KATNBL1 EMC4 TMCO5B FMN1 LOC101928042 GOLGA8A SCG5 GOLGA8B MIR1233-2 LOC101928134 GOLGA8N NUTM1 LOC105370757 PGBD4 MIR1233-1 EMC7 AVEN SLC12A6 RYR3 CHRM5 LOC100131315 |
More Information
Additional Information:
For this assay, SNP(s) [rs76845289] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |