Assay Details
Target Gene Details
Entrez Gene ID: | 10417 |
Gene Name: | spondin 2 |
Gene Aliases: |
DIL-1, DIL1, M-SPONDIN, MINDIN |
Location: |
Chr.4:1166932-1208962 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 7 - Exon 8 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SPON2 | NM_001128325.2 | NP_001121797.1 | ||
NM_001199021.1 | NP_001185950.1 | |||
NM_012445.3 | NP_036577.1 | |||
AB027466.1 | BAA85892.1 | |||
AK024499.1 | 2 | 678 | BAB15789.1 | |
AK074618.1 | BAC11092.1 | |||
AK074770.1 | BAC11196.1 | |||
AK130164.1 | ||||
AY358948.1 | AAQ89307.1 | |||
BC002707.2 | AAH02707.1 | |||
BC036341.1 | AAH36341.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv822425 | Chr.4:546316 - 1420011 on Build GRCh38 | Loss | GAK ATP5I MFSD7 LOC101928548 SPON2 TMED11P PCGF3 IDUA LOC105374344 LOC100130872 CPLX1 CRIPAK UVSSA CTBP1 LOC107986211 TMEM175 CTBP1-AS PDE6B DGKQ RNF212 CTBP1-AS2 LOC101928521 NKX1-1 MYL5 LOC100129917 FGFRL1 SLC26A1 MAEA |
nsv593278 | Chr.4:1165892 - 1421910 on Build GRCh38 | Loss | CTBP1 NKX1-1 LOC101928548 LOC100130872 SPON2 CTBP1-AS CRIPAK MAEA CTBP1-AS2 UVSSA |
nsv950331 | Chr.4:1164113 - 1239212 on Build GRCh38 | Deletion | CTBP1 LOC101928548 LOC100130872 SPON2 CTBP1-AS |
nsv519106 | Chr.4:1165203 - 1181073 on Build GRCh38 | Loss | SPON2 |
nsv1012892 | Chr.4:1093083 - 1182842 on Build GRCh38 | Loss | LOC105374344 SPON2 TMED11P RNF212 |
nsv829835 | Chr.4:1103798 - 1310451 on Build GRCh38 | Gain | CTBP1 LOC105374344 LOC101928548 LOC100130872 SPON2 CTBP1-AS TMED11P MAEA RNF212 CTBP1-AS2 |
More Information
Additional Information:
For this assay, SNP(s) [rs140283251] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Non-exonic DGV Variation |