Hs00453658_cn

• Gene Symbol: ARID1A
• Assay Reference Genome Location: Chr.1:26729844 on build GRCh38
• Cytoband: 1p36.11

Target Gene Details

• Entrez Gene ID: 8289
• Gene Name: AT-rich interaction domain 1A
• Gene Aliases: B120, BAF250, BAF250a, BM029, C1orf4, CSS2, ELD, MRD14, OSA1, P270, SMARCF1, hELD, hOSA1
• Location: Chr.1:26696031-26782110 on Build GRCh38
• Assay Gene Location: Overlaps Exon 2 - Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
ARID1A	NM_006015.4			NP_006006.3
	NM_139135.2			NP_624361.1
	AB001895.1			BAA23269.1
	AB210022.1			BAE06104.1
	AF219114.1			AAG17549.2
	AF231056.1			AAG33967.1
	AF265208.1			AAF75765.1
	AF268913.1			AAK54505.1
	AF521670.1			AAN03446.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1000012	Chr.1:26714969 - 27141528 on Build GRCh38	Gain	NUDC FAM46B ZDHHC18 ARID1A KDF1 SFN TRNP1 PIGV SLC9A1 GPATCH3 NR0B2 GPN2

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
neural tube closure
cardiac chamber development
optic cup formation involved in camera-type eye development
nucleosome disassembly
chromatin remodeling
maintenance of chromatin silencing
transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
covalent chromatin modification
intracellular estrogen receptor signaling pathway
androgen receptor signaling pathway
forebrain development
nucleosome mobilization
glucocorticoid receptor signaling pathway
ATP-dependent chromatin remodeling
positive regulation of transcription, DNA-templated
chromatin-mediated maintenance of transcription
cardiac muscle cell differentiation
placenta blood vessel development
toxin transport

Function(s)

DNA binding
transcription coactivator activity
protein binding
ligand-dependent nuclear receptor binding
nucleosome binding