Assay Details
Target Gene Details
Entrez Gene ID: | 23645 |
Gene Name: | protein phosphatase 1 regulatory subunit 15A |
Gene Aliases: |
GADD34 |
Location: |
Chr.19:48872392-48876062 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 2 - Exon 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
PPP1R15A | NM_014330.3 | NP_055145.3 | ||
AK001361.1 | BAA91649.1 | |||
AK225632.1 | ||||
AK296668.1 | ||||
AK297615.1 | ||||
AK298765.1 | ||||
BC003067.2 | AAH03067.1 | |||
CR457259.1 | CAG33540.1 | |||
U83981.1 | AAC25631.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss | SNAR-C4 SNAR-A7 SNAR-A4 AKT1S1 ELSPBP1 MIR5088 CCDC155 NTF4 LOC105447645 DBP PLEKHA4 SNORD35A ZNF473 EMP3 FAM83E CGB7 C19orf68 MAMSTR SNRNP70 IL4I1 SLC6A16 CPT1C NUCB1-AS1 SNAR-A14 SULT2B1 SNAR-A10 FCGRT SNAR-C3 C19orf73 CGB8 LIG1 MIR6800 CARD8 PLA2G4C DHDH ZNF114 SNAR-C2 FUT1 SNAR-C5 SNORD33 CARD8-AS1 TULP2 PRMT1 RUVBL2 PTH2 LIN7B LHB SPACA4 RPS11 BCL2L12 SNAR-A13 TEAD2 MIR4751 SNAR-A12 KCNA7 SNAR-A6 ATF5 CABP5 GYS1 FUZ IZUMO1 ALDH16A1 MIR4749 SNAR-A3 KCNJ14 FGF21 LOC101928295 SIGLEC16 IRF3 TMEM143 FTL GRWD1 CCDC114 LOC100287477 KDELR1 CGB2 PPP1R15A CYTH2 SNAR-A5 SNORD32A PTOV1 RRAS VRK3 DKKL1 RPL13A NUCB1 FLT3LG SEC1P TRPM4 SCAF1 PPFIA3 MED25 SNAR-C1 SPHK2 PTOV1-AS1 SNORD35B SLC17A7 MIR6798 BAX SNAR-A2 GFY NTN5 CGB3 CGB1 PRR12 RCN3 GRIN2D SNAR-A11 SNAR-B1 RASIP1 NUP62 LMTK3 PIH1D1 SNAR-G2 CGB5 HRC SNAR-A9 LOC101059948 SIGLEC11 NOSIP SNAR-D SNAR-A1 BSPH1 AP2A1 BCAT2 PNKP SNAR-G1 HSD17B14 MIR4324 SNORD34 FLJ26850 SYNGR4 TSKS FUT2 CA11 RPL18 MIR150 CD37 MIR4750 TBC1D17 ADM5 PRRG2 LOC105372430 MIR6799 PLA2G4C-AS1 SNAR-B2 SNAR-A8 PTOV1-AS2 |
nsv470148 | Chr.19:48865586 - 48906934 on Build GRCh38 | Gain | TULP2 PLEKHA4 NUCB1 PPP1R15A |
nsv833856 | Chr.19:48847866 - 48986483 on Build GRCh38 | Loss | NUCB1-AS1 GYS1 BAX FTL DHDH TULP2 PLEKHA4 NUCB1 PPP1R15A |
nsv833855 | Chr.19:48750098 - 48949781 on Build GRCh38 | Loss | NUCB1-AS1 FUT1 BCAT2 DHDH TULP2 PLEKHA4 HSD17B14 FGF21 NUCB1 PPP1R15A |
More Information
Additional Information:
For this assay, SNP(s) [rs77919834] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Non-exonic DGV Variation |