Hs00404030_cn

• Gene Symbol: CDH15
• Assay Reference Genome Location: Chr.16:89185209 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 1013
• Gene Name: cadherin 15
• Gene Aliases: CDH14, CDH3, CDHM, MCAD, MRD3
• Location: Chr.16:89171755-89195492 on Build GRCh38
• Assay Gene Location: Overlaps Intron 4 - Exon 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CDH15	NM_004933.2			NP_004924.1
	AK308631.1
	BC008951.2			AAH08951.1
	D83542.1			BAA12012.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv509638	Chr.16:89152681 - 89296203 on Build GRCh38	Insertion	ANKRD11 SLC22A31 ACSF3 ZNF778 LOC400558 LINC00304 CDH15 LOC105371414
nsv952072	Chr.16:89032193 - 89201992 on Build GRCh38	Deletion	SLC22A31 ACSF3 LOC400558 LINC00304 CDH15
nsv573727	Chr.16:89169527 - 89193067 on Build GRCh38	Loss	CDH15
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	LOC100289580 LOC339059 ZNF778 LOC400558 GALNS LINC00304 CDH15 APRT TRAPPC2L CDT1 PABPN1L PIEZO1 SLC22A31 ACSF3 CTU2 LOC107987238 LOC100129697 MIR4722 CBFA2T3 LOC101927793 LOC105371409
nsv471115	Chr.16:88801844 - 89197442 on Build GRCh38	Loss	LOC400558 GALNS LINC00304 CDH15 APRT TRAPPC2L CDT1 PABPN1L SLC22A31 ACSF3 LOC107987238 LOC100129697 CBFA2T3 LOC101927793 LOC105371409
nsv573724	Chr.16:89100686 - 89217401 on Build GRCh38	Loss	SLC22A31 ACSF3 ZNF778 LOC400558 LINC00304 CDH15
nsv1141297	Chr.16:89182392 - 89191792 on Build GRCh38	Duplication	CDH15
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	LOC100289580 LOC339059 ZNF778 LOC400558 GALNS LINC00304 CDH15 APRT TRAPPC2L LOC105371414 CDT1 PABPN1L ANKRD11 PIEZO1 SLC22A31 ACSF3 LOC107987238 LOC100129697 LOC100287036 CBFA2T3 LOC101927793 LOC105371409
dgv3066n100	Chr.16:89067685 - 89301626 on Build GRCh38	Gain	ANKRD11 SLC22A31 ACSF3 ZNF778 LOC400558 LINC00304 CDH15 LOC105371414
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	SNAI3-AS1 TUBB8P7 LOC400558 GALNS VPS9D1-AS1 FAM157C CDT1 PABPN1L SNORD68 LOC101927817 DPEP1 LOC100287036 SPATA2L CHMP1A ZNF778 VPS9D1 CDK10 LOC105371419 APRT AFG3L1P RNF166 FANCA CYBA LOC105371409 LOC339059 LOC107984817 ZNF276 LINC00304 CDH15 ANKRD11 CENPBD1 PIEZO1 MVD SLC22A31 ACSF3 SPATA33 SPIRE2 TUBB3 LOC100129697 MIR4722 DEF8 LOC100289580 SNAI3 SPG7 MC1R TRAPPC2L LOC105371414 CPNE7 DBNDD1 TCF25 RPL13 GAS8 GAS8-AS1 CTU2 LOC107987238 IL17C URAHP PRDM7 CBFA2T3 LOC101927793
esv2763149	Chr.16:89179547 - 89368114 on Build GRCh38	Gain	ANKRD11 SLC22A31 ZNF778 CDH15 LOC100287036 LOC105371414
dgv5320n54	Chr.16:89114475 - 89197443 on Build GRCh38	Loss	SLC22A31 ACSF3 LOC400558 LINC00304 CDH15

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
adherens junction organization
positive regulation of muscle cell differentiation

Function(s)

calcium ion binding
protein binding