Assay Details
Target Gene Details
Entrez Gene ID: | 284415 |
Gene Name: | V-set and transmembrane domain containing 1 |
Gene Aliases: |
SIRL-1, SIRL1, UNQ3033 |
Location: |
Chr.19:54040825-54063966 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 8 - Exon 9 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
VSTM1 | NM_001288791.1 | NP_001275720.1 | ||
NM_001288792.1 | NP_001275721.1 | |||
NM_001288793.1 | NP_001275722.1 | |||
NM_198481.3 | NP_940883.2 | |||
NR_110142.1 | ||||
XM_011526845.1 | XP_011525147.1 | |||
XM_011526846.1 | XP_011525148.1 | |||
XM_011526847.1 | XP_011525149.1 | |||
XM_011526848.1 | XP_011525150.1 | |||
XM_011526849.1 | XP_011525151.1 | |||
XM_017026666.1 | XP_016882155.1 | |||
AY358542.1 | AAQ88906.1 | |||
BC100943.2 | AAI00944.1 | |||
BG189223.1 | ||||
BQ446114.1 | ||||
DQ479397.1 | ||||
FJ584316.1 | ||||
FJ584317.1 | ||||
FJ584318.1 | ||||
FJ584319.1 | ||||
FJ584320.1 | ||||
FJ882051.1 | ||||
FN398145.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv510773 | Chr.19:54017180 - 54132236 on Build GRCh38 | Deletion | PRPF31 NDUFA3 VSTM1 TARM1 OSCAR TFPT |
nsv580110 | Chr.19:53961144 - 54093354 on Build GRCh38 | Gain | VSTM1 TARM1 CACNG8 CACNG6 MIR935 |
nsv1057516 | Chr.19:53986233 - 54046901 on Build GRCh38 | Gain | VSTM1 CACNG8 CACNG6 |
nsv1063127 | Chr.19:53926876 - 54068977 on Build GRCh38 | Gain | VSTM1 CACNG8 CACNG6 CACNG7 MIR935 |
esv2718812 | Chr.19:53184636 - 54322450 on Build GRCh38 | Deletion | MIR518E MIR519E VSTM1 MIR518A2 LILRA5 CNOT3 MIR520D MIR526A1 MIR371A MIR526A2 MIR520B DPRX ZNF665 MBOAT7 LOC284379 MIR516A2 MIR526B ZNF813 MIR498 MIR518A1 MIR515-2 MIR1283-2 TSEN34 MIR519A1 VN1R2 MIR518C MIR520E MIR518B PRKCG MIR522 MIR519D LENG1 MIR518F MIR517C MIR512-1 PRPF31 LILRB5 NDUFA3 MIR519A2 NLRP12 MIR520C TARM1 MIR1323 MYADM LILRB2 MIR520A MIR371B MIR517B MIR527 MIR516A1 LOC105372457 MIR525 MIR1283-1 CACNG6 ZNF677 LILRA6 MIR520H MIR518D MIR515-1 ZNF818P MIR517A MIR4752 BIRC8 MIR521-2 MIR523 MIR520F LILRB3 FAM90A27P ZNF845 MIR512-2 TPM3P9 TMC4 ZNF761 CACNG8 ZNF331 ZNF765 RPS9 MIR524 TFPT MIR516B1 MIR516B2 VN1R4 MIR520G MIR519C ZNF525 MIR372 MIR519B MIR521-1 MIR373 CACNG7 MIR935 OSCAR |
nsv833877 | Chr.19:53951529 - 54117323 on Build GRCh38 | Loss | PRPF31 NDUFA3 VSTM1 TARM1 CACNG8 CACNG6 MIR935 OSCAR TFPT |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |