Hs00394001_cn

• Gene Symbol: CNTN4
• Assay Reference Genome Location: Chr.3:3040098 on build GRCh38
• Cytoband: 3p26.2

Target Gene Details

• Entrez Gene ID: 152330
• Gene Name: contactin 4
• Gene Aliases: AXCAM, BIG-2
• Location: Chr.3:2098771-3059080 on Build GRCh38
• Assay Gene Location: Within Exon 28

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CNTN4	NM_001206955.1	19	2609	NP_001193884.1
	NM_001206956.1	11	1328	NP_001193885.1
	NM_175607.2	20	2564	NP_783200.1
	NM_175613.2	11	1331	NP_783302.1
	XM_006713004.3	19	2574	XP_006713067.1
	XM_011533425.2	19	2577	XP_011531727.1
	XM_011533426.2	20	2796	XP_011531728.1
	XM_011533427.2	20	2777	XP_011531729.1
	XM_011533428.2	18	2766	XP_011531730.1
	XM_011533429.2	18	2701	XP_011531731.1
	XM_011533430.2	18	2662	XP_011531732.1
	XM_011533431.2	17	5411	XP_011531733.1
	XM_017005782.1	20	2519	XP_016861271.1
	XM_017005783.1	21	3393	XP_016861272.1
	XM_017005784.1	19	2854	XP_016861273.1
	XM_017005785.1	20	2501	XP_016861274.1
	XM_017005786.1	18	2763	XP_016861275.1
	XM_017005787.1	18	2659	XP_016861276.1
	AF464063.1	1	475	AAN86141.1
	AF549455.1	17	2607	AAP05786.1
	AK057278.1	11	1309
	AK097633.1	14	1855
	AK125460.1	19	2752
	AK314396.1	11	1309
	AY090737.1	19	2446	AAM00025.1
	BC026119.1	11	1311	AAH26119.1

Target Gene Details

• Entrez Gene ID: 100873975
• Gene Name: CNTN4 antisense RNA 1
• Gene Aliases: -
• Location: Chr.3:3039661-3061145 on Build GRCh38
• Assay Gene Location: Within Exon 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CNTN4-AS1	NR_046554.1	4	575
	BM920658.1	4	575

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv589371	Chr.3:2170634 - 3594980 on Build GRCh38	Loss	CRBN CNTN4 LOC100130207 TRNT1 CNTN4-AS1 IL5RA
esv2751994	Chr.3:2200757 - 3178886 on Build GRCh38	Gain	CRBN CNTN4 TRNT1 CNTN4-AS1 IL5RA
esv2422274	Chr.3:2100396 - 3314907 on Build GRCh38	Duplication	CRBN CNTN4 LOC100130207 TRNT1 CNTN4-AS2 CNTN4-AS1 IL5RA
nsv1011872	Chr.3:2782874 - 3057776 on Build GRCh38	Gain	CNTN4 CNTN4-AS1
nsv521796	Chr.3:3038825 - 3151219 on Build GRCh38	Loss	CRBN CNTN4 TRNT1 CNTN4-AS1 IL5RA
dgv4636n100	Chr.3:2825734 - 3271845 on Build GRCh38	Gain	CRBN CNTN4 LOC100130207 TRNT1 CNTN4-AS1 IL5RA

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

neuron cell-cell adhesion
nervous system development
axonogenesis
axon guidance
axonal fasciculation
brain development
neuron projection development
negative regulation of neuron differentiation
regulation of synaptic plasticity