Hs00393719_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54058458 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Within Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1			NP_001275720.1
	NM_001288792.1	3	379	NP_001275721.1
	NM_001288793.1			NP_001275722.1
	NM_198481.3	3	379	NP_940883.2
	NR_110142.1	3	379
	XM_011526845.1	3	392	XP_011525147.1
	XM_011526846.1	3	392	XP_011525148.1
	XM_011526847.1	3	392	XP_011525149.1
	XM_011526848.1	3	392	XP_011525150.1
	XM_011526849.1	3	392	XP_011525151.1
	XM_017026666.1	3	392	XP_016882155.1
	AY358542.1	3	388	AAQ88906.1
	BC100943.2	3	356	AAI00944.1
	DQ479397.1	3	220
	FJ584316.1	3	214
	FJ584317.1	3	214
	FJ584318.1	3	214
	FJ584319.1
	FJ584320.1
	FJ882051.1	3	214
	FN398145.1	3	207

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	VSTM1 TFPT NDUFA3 OSCAR TARM1 PRPF31
nsv580110	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	VSTM1 CACNG6 CACNG8 MIR935 TARM1
nsv2542	Chr.19:54050737 - 54097924 on Build GRCh38	Deletion	VSTM1 OSCAR TARM1
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	VSTM1 CACNG6 CACNG8 CACNG7 MIR935
nsv9750	Chr.19:54049927 - 54058628 on Build GRCh38	Gain	VSTM1
esv3644780	Chr.19:54057724 - 54066399 on Build GRCh38	Gain	VSTM1
dgv663e199	Chr.19:54051591 - 54059132 on Build GRCh38	Deletion	VSTM1
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	MIR527 MIR521-1 MIR373 MIR372 LENG1 TFPT MIR518A2 ZNF813 ZNF677 MIR519D MIR520B TMC4 MIR522 MIR520E LILRA5 CACNG6 PRKCG MIR516A1 MIR371B CACNG8 RPS9 MIR4752 MIR517C MIR523 MIR518B DPRX MIR519A1 ZNF761 NLRP12 MIR526B ZNF765 ZNF818P MIR518D MIR518A1 LOC284379 ZNF665 MIR526A2 MIR520G MIR520H MIR1283-1 MIR518C MIR519C VN1R4 LILRB5 MIR518F TARM1 MIR517B MIR518E VSTM1 MIR512-2 MIR371A CACNG7 MIR516B2 MIR516B1 MIR520C MIR525 MIR520F LOC105372457 MIR526A1 MIR519E MIR519A2 MIR524 MIR519B MBOAT7 LILRB2 MIR521-2 MIR498 ZNF331 MIR1323 BIRC8 NDUFA3 MIR515-2 MYADM ZNF845 FAM90A27P MIR520D MIR520A MIR935 MIR1283-2 MIR515-1 OSCAR VN1R2 MIR517A TSEN34 MIR516A2 CNOT3 ZNF525 TPM3P9 LILRB3 LILRA6 MIR512-1 PRPF31
nsv580137	Chr.19:54053501 - 54058538 on Build GRCh38	Loss	VSTM1
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	VSTM1 CACNG6 CACNG8 TFPT MIR935 NDUFA3 OSCAR TARM1 PRPF31

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity