Assay Details
Target Gene Details
Entrez Gene ID: | 284340 |
Gene Name: | C-X-C motif chemokine ligand 17 |
Gene Aliases: |
DMC, Dcip1, UNQ473, VCC-1, VCC1 |
Location: |
Chr.19:42428538-42443048 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 2 - Exon 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
CXCL17 | NM_198477.2 | NP_940879.1 | ||
NR_133910.1 | ||||
AK292985.1 | ||||
AY358433.1 | AAQ88799.1 | |||
AY598464.1 | AAU04875.1 | |||
BC093946.1 | AAH93946.1 | |||
BC112095.1 | AAI12096.1 | |||
BM978124.1 | ||||
BU684368.1 |
Target Gene Details
Entrez Gene ID: | 100996307 |
Gene Name: | LIPE antisense RNA 1 |
Gene Aliases: |
- |
Location: |
Chr.19:42397148-42652355 on Build GRCh38 |
Assay Gene Location: | Within Intron 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
LIPE-AS1 | NR_073179.1 | |||
NR_073180.1 | ||||
AK096849.1 | BAC04875.1 | |||
AK310497.1 | ||||
AK311181.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv526186 | Chr.19:42172329 - 42699355 on Build GRCh38 | Gain | MEGF8 MIR8077 GSK3A ZNF526 PRR19 LOC101930071 LIPE-AS1 POU2F2 DEDD2 TMEM145 PAFAH1B3 CEACAM8 LIPE CXCL17 CIC CEACAM1 CNFN ERF |
esv2422471 | Chr.19:42228989 - 43165333 on Build GRCh38 | Deletion | LOC100289650 MEGF8 PSG8 PSG7 MIR8077 PSG10P GSK3A PRR19 LOC101930071 LIPE-AS1 TMEM145 PSG6 PAFAH1B3 PSG11 CEACAM8 PSG2 LIPE PSG1 CXCL17 CIC PSG3 CEACAM1 CNFN ERF |
More Information
Additional Information:
For this assay, SNP(s) [rs76940418] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |