Hs00376788_cn

• Gene Symbol: PCDHGA1
• Assay Reference Genome Location: Chr.5:141403287 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56114
• Gene Name: protocadherin gamma subfamily A, 1
• Gene Aliases: PCDH-GAMMA-A1
• Location: Chr.5:141330685-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA1	NM_018912.2			NP_061735.1
	AF152318.1			AAD43712.1

Target Gene Details

• Entrez Gene ID: 56113
• Gene Name: protocadherin gamma subfamily A, 2
• Gene Aliases: PCDH-GAMMA-A2
• Location: Chr.5:141338760-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA2	NM_018915.3			NP_061738.1
	AF152322.1			AAD43716.1

Target Gene Details

• Entrez Gene ID: 56112
• Gene Name: protocadherin gamma subfamily A, 3
• Gene Aliases: PCDH-GAMMA-A3
• Location: Chr.5:141344034-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA3	NM_018916.3			NP_061739.2
	AB208927.1			BAD92164.1
	AF152323.1			AAD43717.1

Target Gene Details

• Entrez Gene ID: 56111
• Gene Name: protocadherin gamma subfamily A, 4
• Gene Aliases: PCDH-GAMMA-A4
• Location: Chr.5:141355025-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA4	NM_018917.3			NP_061740.2
	AF152324.1			AAD43718.1

Target Gene Details

• Entrez Gene ID: 56110
• Gene Name: protocadherin gamma subfamily A, 5
• Gene Aliases: CDH-GAMMA-A5, ME3, PCDH-GAMMA-A5
• Location: Chr.5:141364331-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA5	NM_018918.2			NP_061741.1
	AF152325.1			AAD43719.1

Target Gene Details

• Entrez Gene ID: 56109
• Gene Name: protocadherin gamma subfamily A, 6
• Gene Aliases: PCDH-GAMMA-A6
• Location: Chr.5:141374084-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA6	NM_018919.2			NP_061742.1
	AB209178.1			BAD92415.1
	AF152326.1			AAD43720.1
	BC146651.1

Target Gene Details

• Entrez Gene ID: 56108
• Gene Name: protocadherin gamma subfamily A, 7
• Gene Aliases: PCDH-GAMMA-A7
• Location: Chr.5:141382739-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA7	NM_018920.3			NP_061743.1
	AB208958.1			BAD92195.1
	AF152327.1			AAD43721.1

Target Gene Details

• Entrez Gene ID: 9708
• Gene Name: protocadherin gamma subfamily A, 8
• Gene Aliases: PCDH-GAMMA-A8
• Location: Chr.5:141391916-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA8	NM_032088.1			NP_114477.1
	AF152328.1			AAD43722.1

Target Gene Details

• Entrez Gene ID: 56107
• Gene Name: protocadherin gamma subfamily A, 9
• Gene Aliases: PCDH-GAMMA-A9
• Location: Chr.5:141402953-141512979 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA9	NM_018921.2	1	335	NP_061744.1
	NM_032089.1	1	335	NP_114478.1
	AF152329.1	1	335	AAD43723.1
	AF152516.1	1	335	AAD43776.1
	BC132769.1	1	356

Target Gene Details

• Entrez Gene ID: 56104
• Gene Name: protocadherin gamma subfamily B, 1
• Gene Aliases: PCDH-GAMMA-B1
• Location: Chr.5:141350261-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB1	NM_018922.2			NP_061745.1
	AF152330.1			AAD43724.1

Target Gene Details

• Entrez Gene ID: 56103
• Gene Name: protocadherin gamma subfamily B, 2
• Gene Aliases: PCDH-GAMMA-B2
• Location: Chr.5:141360136-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB2	NM_018923.2			NP_061746.1
	AF152331.1			AAD43725.1

Target Gene Details

• Entrez Gene ID: 56102
• Gene Name: protocadherin gamma subfamily B, 3
• Gene Aliases: PCDH-GAMMA-B3
• Location: Chr.5:141370264-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB3	NM_018924.4			NP_061747.2
	AF152332.1			AAD43726.1
	BC150172.1

Target Gene Details

• Entrez Gene ID: 8641
• Gene Name: protocadherin gamma subfamily B, 4
• Gene Aliases: CDH20, FIB2, PCDH-GAMMA-B4
• Location: Chr.5:141387885-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB4	NM_003736.2			NP_003727.1
	AF152333.1			AAD43727.1

Target Gene Details

• Entrez Gene ID: 56101
• Gene Name: protocadherin gamma subfamily B, 5
• Gene Aliases: PCDH-GAMMA-B5
• Location: Chr.5:141398128-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB5	NM_018925.2			NP_061748.1
	AF152334.1			AAD43728.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHGA3 PCDHGB6 PCDHGA6 PCDHGB3 PCDHB6 PCDHB18P SLC25A2 PCDHB8 PCDHB11 PCDHA4 PCDHB16 PCDHB17P PCDHA8 PCDHB4 PCDHGA9 PCDHA2 PCDHA9 PCDHGA5 LOC101926905 PCDHA1 PCDHB13 PCDHB2 PCDHGA11 PCDHB5 PCDHGA10 PCDHGA7 PCDHA6 PCDHB3 PCDHA10 PCDHB15 PCDHA12 PCDHAC2 PCDHB7 PCDHB9 PCDHA13 PCDHGB8P PCDHB12 PCDHGB5 PCDHGB7 PCDHB19P PCDHB14 PCDHGA8 PCDHA7 PCDHGA1 PCDHGB1 PCDHA5 PCDHGB2 PCDHGB4 PCDHAC1 PCDHGA12 PCDHGA4 PCDHB1 PCDHA3 PCDHGA2 PCDHB10 PCDHA11 TAF7
nsv599922	Chr.5:141341879 - 141416532 on Build GRCh38	Loss	PCDHGB2 PCDHGA3 PCDHGA5 PCDHGB6 PCDHGB4 PCDHGA6 PCDHGB3 PCDHGB5 PCDHGA8 PCDHGA1 PCDHGA10 PCDHGA4 PCDHGA7 PCDHGA2 PCDHGA9 PCDHGB1
nsv519627	Chr.5:141392860 - 141427689 on Build GRCh38	Loss	PCDHGB2 PCDHGA3 PCDHGA5 PCDHGB6 PCDHGB4 PCDHGA6 PCDHGB3 PCDHGB8P PCDHGB5 PCDHGB7 PCDHGA8 PCDHGA11 PCDHGA1 PCDHGA10 PCDHGA4 PCDHGA7 PCDHGA2 PCDHGA9 PCDHGB1

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

homophilic cell adhesion via plasma membrane adhesion molecules
endosome to lysosome transport
lipid tube assembly involved in organelle fusion
cell adhesion
calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
biological_process

Function(s)

calcium ion binding
poly(A) RNA binding
molecular_function