Assay Details
Target Gene Details
Entrez Gene ID: | 284415 |
Gene Name: | V-set and transmembrane domain containing 1 |
Gene Aliases: |
SIRL-1, SIRL1, UNQ3033 |
Location: |
Chr.19:54040825-54063966 on Build GRCh38 |
Assay Gene Location: | Within Exon 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
VSTM1 | NM_001288791.1 | NP_001275720.1 | ||
NM_001288792.1 | 3 | 478 | NP_001275721.1 | |
NM_001288793.1 | NP_001275722.1 | |||
NM_198481.3 | 3 | 478 | NP_940883.2 | |
NR_110142.1 | 3 | 478 | ||
XM_011526845.1 | 3 | 491 | XP_011525147.1 | |
XM_011526846.1 | 3 | 491 | XP_011525148.1 | |
XM_011526847.1 | 3 | 491 | XP_011525149.1 | |
XM_011526848.1 | 3 | 491 | XP_011525150.1 | |
XM_011526849.1 | 3 | 491 | XP_011525151.1 | |
XM_017026666.1 | 3 | 491 | XP_016882155.1 | |
AY358542.1 | 3 | 487 | AAQ88906.1 | |
BC100943.2 | 3 | 455 | AAI00944.1 | |
BQ446114.1 | 7 | 555 | ||
DQ479397.1 | 3 | 319 | ||
FJ584316.1 | 3 | 313 | ||
FJ584317.1 | 3 | 313 | ||
FJ584318.1 | 3 | 313 | ||
FJ584319.1 | ||||
FJ584320.1 | ||||
FJ882051.1 | 3 | 313 | ||
FN398145.1 | 3 | 306 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv510773 | Chr.19:54017180 - 54132236 on Build GRCh38 | Deletion | TARM1 PRPF31 TFPT NDUFA3 VSTM1 OSCAR |
nsv580110 | Chr.19:53961144 - 54093354 on Build GRCh38 | Gain | MIR935 TARM1 CACNG8 VSTM1 CACNG6 |
nsv2542 | Chr.19:54050737 - 54097924 on Build GRCh38 | Deletion | TARM1 VSTM1 OSCAR |
nsv1063127 | Chr.19:53926876 - 54068977 on Build GRCh38 | Gain | MIR935 CACNG8 VSTM1 CACNG7 CACNG6 |
nsv9750 | Chr.19:54049927 - 54058628 on Build GRCh38 | Gain | VSTM1 |
esv3644780 | Chr.19:54057724 - 54066399 on Build GRCh38 | Gain | VSTM1 |
dgv663e199 | Chr.19:54051591 - 54059132 on Build GRCh38 | Deletion | VSTM1 |
esv2718812 | Chr.19:53184636 - 54322450 on Build GRCh38 | Deletion | MIR520D ZNF761 RPS9 MIR518A2 ZNF845 ZNF813 TARM1 PRPF31 MIR371B MIR4752 MIR517B MIR520H MIR1283-1 MIR373 FAM90A27P MIR515-2 MIR526B MIR517A LOC105372457 NLRP12 MIR518B TPM3P9 VN1R2 CACNG7 LILRA6 MIR517C MIR518E MIR519C MIR519B MIR526A1 MIR516A2 LENG1 MBOAT7 MIR522 MIR520G CACNG6 ZNF331 MIR371A MIR524 PRKCG TMC4 ZNF818P MIR521-2 MIR935 MIR515-1 MIR519A2 MIR1283-2 ZNF765 MIR519D LILRA5 MIR519A1 MIR516B2 VN1R4 MIR518D DPRX MIR512-2 NDUFA3 VSTM1 MIR516B1 MIR526A2 ZNF677 MIR520C MIR521-1 OSCAR MIR372 MIR518F MIR512-1 MYADM LILRB3 LILRB5 MIR1323 TFPT MIR519E MIR525 ZNF525 MIR527 BIRC8 MIR520E MIR498 MIR523 MIR520F LOC284379 MIR520A MIR516A1 MIR518C CACNG8 LILRB2 ZNF665 CNOT3 TSEN34 MIR518A1 MIR520B |
nsv580137 | Chr.19:54053501 - 54058538 on Build GRCh38 | Loss | VSTM1 |
nsv833877 | Chr.19:53951529 - 54117323 on Build GRCh38 | Loss | MIR935 TARM1 CACNG8 PRPF31 TFPT NDUFA3 VSTM1 CACNG6 OSCAR |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |