Assay Details
Target Gene Details
Entrez Gene ID: | 22888 |
Gene Name: | U-box domain containing 5 |
Gene Aliases: |
RNF37, UBCE7IP5, UIP5, hUIP5 |
Location: |
Chr.20:3107573-3159910 on Build GRCh38 |
Assay Gene Location: | Within Exon 5 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
UBOX5 | NM_001267584.1 | 5 | 2326 | NP_001254513.1 |
NM_014948.3 | 5 | 2331 | NP_055763.1 | |
NM_199415.2 | 4 | 2169 | NP_955447.1 | |
AB020667.1 | 5 | 2299 | BAA74883.2 | |
AK022444.1 | ||||
AK222570.1 | BAD96290.1 | |||
AK222876.1 | BAD96596.1 | |||
BC000515.2 | AAH00515.1 | |||
BC046122.1 | AAH46122.1 |
Target Gene Details
Entrez Gene ID: | 100134015 |
Gene Name: | UBOX5 antisense RNA 1 |
Gene Aliases: |
- |
Location: |
Chr.20:3106911-3150867 on Build GRCh38 |
Assay Gene Location: | Within Exon 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
UBOX5-AS1 | NR_038395.1 | 2 | 774 | |
AK097516.1 | 2 | 774 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv521437 | Chr.20:3107364 - 3110624 on Build GRCh38 | Loss | UBOX5 UBOX5-AS1 |
nsv585276 | Chr.20:3030542 - 3366307 on Build GRCh38 | Gain | MRPS26 FASTKD5 ITPA DDRGK1 PTPRA UBOX5 SLC4A11 GNRH2 OXT LZTS3 C20orf194 AVP UBOX5-AS1 |
nsv833897 | Chr.20:2990324 - 3175146 on Build GRCh38 | Loss | MRPS26 GNRH2 OXT FASTKD5 LZTS3 PTPRA AVP UBOX5 UBOX5-AS1 |
nsv526273 | Chr.20:3109478 - 3110624 on Build GRCh38 | Loss | UBOX5 UBOX5-AS1 |
More Information
Additional Information:
For this assay, SNP(s) [rs115098595] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |