Assay Details
Target Gene Details
Entrez Gene ID: | 29101 |
Gene Name: | SSU72 homolog, RNA polymerase II CTD phosphatase |
Gene Aliases: |
HSPC182, PNAS-120 |
Location: |
Chr.1:1541673-1574882 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 3 - Exon 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SSU72 | NM_014188.2 | NP_054907.1 | ||
AF161530.1 | AAF29145.1 | |||
AF277178.1 | AAK07538.1 | |||
AJ276409.1 | CAC81713.1 | |||
AK001809.1 | BAA91921.1 | |||
AK127149.1 | ||||
AK297505.1 | ||||
AK310067.1 | ||||
BC008070.2 | AAH08070.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv545000 | Chr.1:1421170 - 1573654 on Build GRCh38 | Loss | VWA1 ANKRD65 ATAD3B SSU72 TMEM88B LOC107985729 ATAD3A LOC102724312 ATAD3C TMEM240 |
nsv10161 | Chr.1:776731 - 1777210 on Build GRCh38 | Gain+Loss | LOC105378948 AGRN MIR6808 LOC100288175 PLEKHN1 CPTP MIR429 NADK AURKAIP1 FAM87B PERM1 B3GALT6 CPSF3L KLHL17 DVL1 SSU72 TMEM88B TAS1R3 ATAD3A TTLL10 ATAD3C TTLL10-AS1 MXRA8 FNDC10 TNFRSF4 MIB2 LOC148413 UBE2J2 SAMD11 LOC107985728 ACAP3 LINC01342 LOC102724312 MIR6727 MIR200B TNFRSF18 MRPL20 LOC100287934 LINC00115 SCNN1D MIR6726 C1orf159 ISG15 TMEM240 VWA1 LOC100130417 ANKRD65 RNF223 LOC107985729 MMP23A CDK11A FAM41C ATAD3B SDF4 SLC35E2 LINC01128 NOC2L MIR200A FAM132A SLC35E2B PUSL1 CDK11B HES4 LOC100288069 CCNL2 LOC284600 MMP23B |
nsv482937 | Chr.1:10001 - 2368561 on Build GRCh38 | Loss | LOC100506504 LOC105378948 CFAP74 FAAP20 LOC101928626 LOC100288175 CPTP MIR6723 OR4F5 SKI CPSF3L SSU72 TMEM88B ATAD3A MTND2P28 MXRA8 FNDC10 OR4F16 MIB2 LOC100132287 SAMD11 LINC01342 LOC102724312 LOC102725121 MIR6727 MIR200B MRPL20 SCNN1D LOC100133331 MIR6726 C1orf159 CALML6 LOC100130417 ANKRD65 RNF223 MMP23A CDK11A FAM41C SLC35E2 LINC01128 NOC2L LOC105378589 GNB1 MIR200A LOC105378591 HES4 MIR6859-2 AGRN MIR6808 WASH7P PLEKHN1 MIR429 NADK AURKAIP1 FAM87B PERM1 B3GALT6 DDX11L1 KLHL17 MIR1302-2 DVL1 TAS1R3 TTLL10 ATAD3C TTLL10-AS1 TNFRSF4 LOC100134822 OR4F29 LOC105378592 MORN1 LOC148413 UBE2J2 LOC107985728 ACAP3 LOC729737 TMEM52 TNFRSF18 LOC105378947 LOC100287934 LINC00115 LOC107984841 ISG15 MIR6859-1 TMEM240 VWA1 LOC107985729 FAM138A PRKCZ GABRD ATAD3B SDF4 MTND1P23 LOC100129534 FAM132A LOC105378949 SLC35E2B PUSL1 CDK11B LOC100288069 CCNL2 LOC284600 MMP23B |
nsv950452 | Chr.1:1106921 - 1637538 on Build GRCh38 | Deletion | MIR6727 MIR200B TNFRSF18 MRPL20 MIR6808 SCNN1D MIR6726 C1orf159 CPTP TMEM240 MIR429 VWA1 ANKRD65 AURKAIP1 LOC107985729 B3GALT6 CPSF3L DVL1 ATAD3B SSU72 TMEM88B TAS1R3 SDF4 ATAD3A TTLL10 MIR200A ATAD3C TTLL10-AS1 MXRA8 FNDC10 TNFRSF4 MIB2 FAM132A PUSL1 CDK11B LOC148413 UBE2J2 CCNL2 ACAP3 LINC01342 LOC102724312 MMP23B |
nsv1011818 | Chr.1:1394332 - 1575421 on Build GRCh38 | Gain | ATAD3B SSU72 MRPL20 TMEM88B ATAD3A ATAD3C TMEM240 VWA1 ANKRD65 LOC148413 LOC107985729 CCNL2 LOC102724312 |
esv2758913 | Chr.1:1389149 - 2092899 on Build GRCh38 | Gain+Loss | TMEM52 MRPL20 CFAP74 TMEM240 VWA1 CALML6 ANKRD65 NADK LOC107985729 MMP23A CDK11A PRKCZ GABRD ATAD3B SSU72 TMEM88B SLC35E2 ATAD3A LOC105378589 GNB1 ATAD3C FNDC10 MIB2 LOC105378591 LOC105378949 SLC35E2B CDK11B LOC148413 CCNL2 LOC102724312 MMP23B |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |