Assay Details
Target Gene Details
Entrez Gene ID: | 84231 |
Gene Name: | TNF receptor associated factor 7 |
Gene Aliases: |
RFWD1, RNF119 |
Location: |
Chr.16:2155752-2178129 on Build GRCh38 |
Assay Gene Location: | Within Exon 8 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TRAF7 | NM_032271.2 | 8 | 613 | NP_115647.2 |
XM_005255627.4 | 8 | 659 | XP_005255684.1 | |
XM_011522700.1 | 8 | 655 | XP_011521002.1 | |
AK090624.1 | 8 | 627 | ||
AL136921.1 | 7 | 509 | CAB66855.1 | |
AY569455.1 | 7 | 566 | AAS68363.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2422427 | Chr.16:10001 - 2723164 on Build GRCh38 | Duplication | TPSB2 FLJ42627 AMDHD2 GFER MIR3176 RNF151 RAB26 HBA2 MPG MIR3178 LOC106660606 EME2 TBL3 MEIOB SNORD60 SSTR5 WDR24 NUBP2 SSTR5-AS1 HBZ NTN3 PIGQ NARFL HBM LOC105371184 MRPS34 METTL26 PRR25 MSRB1 BAIAP3 HAGHL MRPL28 MIR6768 TSC2 SYNGR3 MIR6767 MIR940 NME4 STUB1 HBA1 SNRNP25 NHLRC4 PRR35 RHOT2 LUC7L ECI1 JMJD8 ERVK13-1 MIR1225 TPSG1 NPW TPSD1 RAB40C PGP CRAMP1 FAHD1 CAPN15 LOC729652 RHBDF1 NDUFB10 LOC100287175 ATP6V0C KCTD5 ZNF598 MCRIP2 IFT140 CACNA1H MIR6511B1 HS3ST6 PDIA2 LOC105371049 HN1L ABCA17P TELO2 MLST8 NME3 MIR5587 LMF1 ABCA3 HAGH SOX8 DDX11L10 LOC105371047 CHTF18 SNHG19 AXIN1 PRSS27 HBQ1 FAM234A FBXL16 MIR3677 RPL23AP5 RGS11 PRSS29P BRICD5 POLR3K UNKL LOC652276 LOC105371046 FAM173A MIR662 RPUSD1 MSLN WDR90 RPS2 CEMP1 SNORA64 LINC00254 TSR3 PKD1 GNPTG LINC00235 RNPS1 METRN LOC100134368 IGFALS C16orf91 LOC107987233 PTX4 SPSB3 RPL3L LOC105371045 WASIR2 CCDC154 SNORA10 RHBDL1 DNASE1L2 MIR3177 LOC101929280 NPRL3 ARHGDIG LOC107984876 LOC105371038 C1QTNF8 MIR6859-4 MIR3180-5 LMF1-AS1 PDPK1 DECR2 CCDC78 UBE2I TPSAB1 MIR4516 NOXO1 CLCN7 WFIKKN1 CCNF NTHL1 E4F1 RAB11FIP3 TMEM204 TMEM8A TBC1D24 C16orf59 GNG13 TRAF7 CASKIN1 SLC9A3R2 SNHG9 SNORA78 MAPK8IP3 MIR4717 |
nsv471072 | Chr.16:1971892 - 2317508 on Build GRCh38 | Loss | ECI1 MIR3677 GFER MIR1225 RAB26 BRICD5 NPW LOC106660606 TBL3 MIR3180-5 PGP SNORD60 MIR4516 NOXO1 ZNF598 NTHL1 E4F1 MIR6511B1 LOC105371049 TSC2 PKD1 RNPS1 SYNGR3 MIR940 MLST8 TRAF7 ABCA3 CASKIN1 SLC9A3R2 SNHG19 DNASE1L2 MIR4717 |
dgv4861n54 | Chr.16:2083900 - 2246850 on Build GRCh38 | Loss | E4F1 ECI1 MIR6511B1 LOC105371049 TSC2 PKD1 MIR1225 RAB26 BRICD5 MIR3180-5 MLST8 PGP SNORD60 TRAF7 CASKIN1 MIR4516 SNHG19 DNASE1L2 |
dgv4863n54 | Chr.16:2141733 - 2274302 on Build GRCh38 | Loss | E4F1 ECI1 MIR3677 RAB26 RNPS1 BRICD5 LOC106660606 MIR940 MLST8 PGP SNORD60 TRAF7 CASKIN1 SNHG19 DNASE1L2 |
nsv457349 | Chr.16:2055054 - 2200730 on Build GRCh38 | Loss | MIR3180-5 SNORD60 MIR6511B1 TRAF7 LOC105371049 TSC2 PKD1 CASKIN1 MIR4516 MIR1225 RAB26 SNHG19 |
nsv457351 | Chr.16:2156590 - 2274302 on Build GRCh38 | Loss | LOC106660606 MIR940 E4F1 ECI1 MLST8 PGP MIR3677 TRAF7 CASKIN1 RNPS1 DNASE1L2 BRICD5 |
nsv1052260 | Chr.16:2074546 - 2629655 on Build GRCh38 | Gain | ECI1 MIR3677 AMDHD2 MIR1225 RAB26 MIR3178 BRICD5 LOC106660606 MIR3180-5 PGP SNORD60 LOC652276 PDPK1 LOC729652 NTN3 MIR4516 ATP6V0C CCNF E4F1 CEMP1 MIR6511B1 MIR6768 LOC105371049 TSC2 PKD1 TBC1D24 RNPS1 C16orf59 MIR6767 MIR940 ABCA17P MLST8 TRAF7 ABCA3 CASKIN1 SNHG19 DNASE1L2 MIR4717 |
nsv952902 | Chr.16:2143400 - 2339999 on Build GRCh38 | Deletion | E4F1 ECI1 MIR3677 RAB26 RNPS1 BRICD5 LOC106660606 MIR940 MLST8 PGP SNORD60 TRAF7 ABCA3 CASKIN1 SNHG19 DNASE1L2 MIR4717 |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |