Assay Details
Target Gene Details
Entrez Gene ID: | 1201 |
Gene Name: | CLN3, battenin |
Gene Aliases: |
BTS, JNCL |
Location: |
Chr.16:28466653-28492302 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
CLN3 | NM_000086.2 | 1 | 203 | NP_000077.1 |
NM_001042432.1 | NP_001035897.1 | |||
NM_001286104.1 | NP_001273033.1 | |||
NM_001286105.1 | 1 | 203 | NP_001273034.1 | |
NM_001286109.1 | 1 | 203 | NP_001273038.1 | |
NM_001286110.1 | 1 | 203 | NP_001273039.1 | |
AF015594.1 | AAD01556.1 | |||
AF015595.1 | AAD01557.1 | |||
AF015598.1 | AAD01560.1 | |||
AF015600.1 | AAD01562.1 | |||
AF015601.1 | AAD01563.1 | |||
AK090709.1 | ||||
AK294070.1 | 1 | 126 | ||
AK294250.1 | ||||
AK295500.1 | ||||
AK297690.1 | 1 | 145 | ||
AK302027.1 | ||||
AK302138.1 | ||||
AK313002.1 | ||||
BC002394.2 | AAH02394.1 | |||
BC004433.1 | AAH04433.1 | |||
BC111068.1 | 1 | 133 | AAI11069.1 | |
BP252176.1 | ||||
DA552461.1 | ||||
DA703317.1 | ||||
DA869025.1 | 1 | 170 | ||
DB101039.1 | ||||
U32680.1 | AAB51075.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv509608 | Chr.16:28449797 - 28632895 on Build GRCh38 | Insertion | SGF29 APOBR IL27 SULT1A1 SULT1A2 NUPR1 CLN3 |
esv2758640 | Chr.16:28163817 - 29139232 on Build GRCh38 | Gain+Loss | SGF29 APOBR TUFM NFATC2IP NPIPB6 MIR4721 MIR4517 LAT NPIPB9 CLN3 SH2B1 SPNS1 LOC101928215 MIR6862-2 ATP2A1-AS1 NPIP SULT1A2 NUPR1 IL27 SULT1A1 XPO6 RABEP2 NPIPB8 EIF3CL CD19 ATP2A1 SBK1 RRN3P2 ATXN2L EIF3C MIR6862-1 |
nsv1059555 | Chr.16:28373144 - 29195838 on Build GRCh38 | Gain | SGF29 APOBR TUFM NFATC2IP MIR4721 MIR4517 LAT NPIPB9 CLN3 SH2B1 SPNS1 LOC101928215 MIR6862-2 ATP2A1-AS1 NPIP SULT1A2 NUPR1 IL27 SULT1A1 RABEP2 NPIPB8 EIF3CL CD19 ATP2A1 RRN3P2 ATXN2L LOC107984832 EIF3C MIR6862-1 |
nsv833180 | Chr.16:28346157 - 28574165 on Build GRCh38 | Loss | SGF29 APOBR IL27 NPIPB6 MIR6862-1 EIF3CL NUPR1 CLN3 |
nsv9415 | Chr.16:28468881 - 28498959 on Build GRCh38 | Gain | APOBR CLN3 |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |