Hs07217891_cn

• Gene Symbol: PIGT
• Assay Reference Genome Location: Chr.20:45421136 on build GRCh38
• Cytoband: 20q13.12

Target Gene Details

• Entrez Gene ID: 51604
• Gene Name: phosphatidylinositol glycan anchor biosynthesis class T
• Gene Aliases: CGI-06, MCAHS3, NDAP, PNH2
• Location: Chr.20:45416067-45426245 on Build GRCh38
• Assay Gene Location: Within Intron 8

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PIGT	NM_001184728.2			NP_001171657.1
	NM_001184729.2			NP_001171658.1
	NM_001184730.2			NP_001171659.1
	NM_015937.5			NP_057021.2
	NR_047691.1
	NR_047692.1
	NR_047693.1
	NR_047694.1
	NR_047695.1
	XM_005260430.2			XP_005260487.1
	XM_005260432.2			XP_005260489.1
	AB057724.1			BAB60854.1
	AF132940.1			AAD27715.1
	AK075469.1			BAC11639.1
	AK225517.1
	AK293294.1
	AK293686.1
	AK296063.1
	AK296139.1
	AK297830.1
	AK299013.1
	AK302093.1
	AK311100.1
	AK311416.1
	AK311520.1
	AK311522.1
	AK316358.1
	AL121742.1			CAB57341.1
	AY358588.1			AAQ88951.1
	BC015022.1
	BC110892.1			AAI10893.1
	BC136827.1
	BC136828.1
	BX537612.1			CAD97799.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1056102	Chr.20:44673341 - 45636248 on Build GRCh38	Loss	SDC4 WFDC8 SYS1-DBNDD2 SYS1 TOMM34 PI3 KCNS1 STK4 RBPJL WFDC2 PIGT WISP2 KCNK15-AS1 PABPC1L DBNDD2 TP53TG5 SLPI STK4-AS1 WFDC12 MIR6812 EPPIN-WFDC6 WFDC6 YWHAB WFDC10A WFDC9 SPINT3 RIMS4 WFDC5 SEMG1 KCNK15 SEMG2 EPPIN MATN4
dgv4319n100	Chr.20:45384898 - 45428463 on Build GRCh38	Gain	SYS1-DBNDD2 MIR6812 PIGT DBNDD2

More Information

Additional Information:

For this assay, SNP(s) [rs116807644] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

attachment of GPI anchor to protein
neuron differentiation
neuron apoptotic process

Function(s)

GPI-anchor transamidase activity
protein binding