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See other PLOD3 CNV Assays ›
Gene Symbol
PLOD3
Assay Reference Genome
Location

Chr.7:101206004 on build GRCh38
Cytoband
7q22.1
Assay ID Hs00335806_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 8985

Gene Name:

 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3

Gene Aliases:

 LH3

Location:

 Chr.7:101205977-101217730 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 19
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PLOD3 NM_001084.4 NP_001075.1
AF046889.1 AAC39753.1
AF068229.1 AAC34808.1
AK075338.1
AL049952.1 CAB43221.1
AY220458.1 AAO61775.1
BC011674.2 AAH11674.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422376 Chr.7:101100204 - 101373190 on Build GRCh38 Duplication CLDN15 LOC101927746 IFT22 AP1S1 COL26A1 MOGAT3 NAT16 VGF LOC101927721 PLOD3 FIS1 SERPINE1 MIR4653 ZNHIT1
esv2422326 Chr.7:101190168 - 101356850 on Build GRCh38 Duplication MOGAT3 CLDN15 LOC101927746 IFT22 LOC101927721 PLOD3 FIS1 ZNHIT1
nsv1030604 Chr.7:101074451 - 101580185 on Build GRCh38 Gain CLDN15 LOC101927746 IFT22 AP1S1 COL26A1 MOGAT3 NAT16 VGF LINC01007 TRIM56 LOC101927721 PLOD3 FIS1 SERPINE1 MIR4653 ZNHIT1
dgv11534n54 Chr.7:101160859 - 101238359 on Build GRCh38 Loss MOGAT3 NAT16 VGF CLDN15 PLOD3 ZNHIT1 AP1S1
esv2752134 Chr.7:101156850 - 101498586 on Build GRCh38 Gain CLDN15 LOC101927746 IFT22 AP1S1 COL26A1 MOGAT3 NAT16 VGF LOC101927721 PLOD3 FIS1 MIR4653 ZNHIT1
nsv607973 Chr.7:101139179 - 101230554 on Build GRCh38 Loss MOGAT3 NAT16 VGF PLOD3 SERPINE1 MIR4653 ZNHIT1 AP1S1
esv2734888 Chr.7:99975623 - 101290285 on Build GRCh38 Deletion MUC12 CLDN15 CNPY4 EPO EPHB4 STAG3L5P-PVRIG2P-PILRB SLC12A9 MCM7 NAT16 VGF ZKSCAN1 TSC22D4 MUC17 PVRIG2P STAG3L5P TRIM56 MIR6875 MIR25 PILRB SERPINE1 ACHE ZNHIT1 SRRT LRCH4 MIR93 GPC2 STAG3 PMS2P1 GNB2 AP1S1 GIGYF1 POP7 AGFG2 LAMTOR4 C7orf61 PCOLCE PCOLCE-AS1 TRIP6 ZAN SPDYE3 AZGP1P1 NYAP1 UFSP1 AP4M1 C7orf43 MIR6840 AZGP1 MIR106B GAL3ST4 SAP25 PPP1R35 GATS PLOD3 MUC3A FIS1 PILRA ACTL6B LOC102724094 TFR2 MIR4653 ZSCAN21 MIR4658 COPS6 MBLAC1 ZNF3 MOGAT3 PVRIG MEPCE FBXO24 LOC105375429 ZCWPW1 TAF6 MOSPD3 ZASP
nsv831075 Chr.7:101049016 - 101273737 on Build GRCh38 Loss MOGAT3 NAT16 VGF CLDN15 MUC17 TRIM56 PLOD3 FIS1 SERPINE1 MIR4653 ZNHIT1 AP1S1
nsv607974 Chr.7:101149529 - 101328323 on Build GRCh38 Loss MOGAT3 NAT16 VGF CLDN15 LOC101927746 IFT22 LOC101927721 PLOD3 FIS1 MIR4653 ZNHIT1 AP1S1
nsv970915 Chr.7:101203715 - 101208789 on Build GRCh38 Duplication PLOD3
nsv1018841 Chr.7:101117129 - 101225018 on Build GRCh38 Gain MOGAT3 NAT16 VGF PLOD3 SERPINE1 MIR4653 ZNHIT1 AP1S1
nsv831076 Chr.7:101185566 - 101368393 on Build GRCh38 Loss COL26A1 MOGAT3 CLDN15 LOC101927746 IFT22 LOC101927721 PLOD3 FIS1 ZNHIT1

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More Information


Additional Information:

For this assay, SNP(s) [rs75493603] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein modifying enzyme

Gene Ontology Categories:

Function(s) Process(es)


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