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See other PLOD3 CNV Assays ›
Gene Symbol
PLOD3
Assay Reference Genome
Location

Chr.7:101206126 on build GRCh38
Cytoband
7q22.1
Assay ID Hs01251644_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 8985

Gene Name:

 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3

Gene Aliases:

 LH3

Location:

 Chr.7:101205977-101217730 on Build GRCh38

Assay Gene Location:

 Within Exon 19
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PLOD3 NM_001084.4 19 2828 NP_001075.1
AF046889.1 19 2588 AAC39753.1
AF068229.1 19 2433 AAC34808.1
AK075338.1 19 2676
AL049952.1 9 1253 CAB43221.1
AY220458.1 19 2436 AAO61775.1
BC011674.2 19 2685 AAH11674.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422376 Chr.7:101100204 - 101373190 on Build GRCh38 Duplication COL26A1 AP1S1 MOGAT3 NAT16 SERPINE1 MIR4653 ZNHIT1 LOC101927746 PLOD3 VGF LOC101927721 IFT22 CLDN15 FIS1
esv2422326 Chr.7:101190168 - 101356850 on Build GRCh38 Duplication MOGAT3 LOC101927721 IFT22 CLDN15 FIS1 ZNHIT1 LOC101927746 PLOD3
nsv1030604 Chr.7:101074451 - 101580185 on Build GRCh38 Gain COL26A1 AP1S1 MOGAT3 NAT16 SERPINE1 TRIM56 LINC01007 MIR4653 ZNHIT1 LOC101927746 PLOD3 VGF LOC101927721 IFT22 CLDN15 FIS1
dgv11534n54 Chr.7:101160859 - 101238359 on Build GRCh38 Loss AP1S1 MOGAT3 VGF NAT16 CLDN15 ZNHIT1 PLOD3
esv2752134 Chr.7:101156850 - 101498586 on Build GRCh38 Gain COL26A1 AP1S1 MOGAT3 NAT16 MIR4653 ZNHIT1 LOC101927746 PLOD3 VGF LOC101927721 IFT22 CLDN15 FIS1
nsv607973 Chr.7:101139179 - 101230554 on Build GRCh38 Loss AP1S1 MOGAT3 VGF NAT16 SERPINE1 MIR4653 ZNHIT1 PLOD3
esv2734888 Chr.7:99975623 - 101290285 on Build GRCh38 Deletion MEPCE STAG3 MIR93 NAT16 SRRT FBXO24 SPDYE3 PVRIG ZCWPW1 AZGP1P1 ZSCAN21 C7orf61 PPP1R35 LOC105375429 LRCH4 CLDN15 MIR25 PILRA GNB2 PLOD3 PCOLCE-AS1 ACHE GATS POP7 ZAN LOC102724094 GIGYF1 FIS1 AGFG2 MUC12 MIR6875 AP1S1 MOGAT3 SERPINE1 MIR4658 TSC22D4 MIR4653 UFSP1 PVRIG2P STAG3L5P-PVRIG2P-PILRB SLC12A9 VGF TAF6 GAL3ST4 ZKSCAN1 AZGP1 STAG3L5P PCOLCE PILRB COPS6 PMS2P1 MUC3A GPC2 MUC17 NYAP1 MBLAC1 TRIM56 CNPY4 ZNF3 AP4M1 LAMTOR4 ZNHIT1 MCM7 EPHB4 TRIP6 ZASP ACTL6B EPO MIR106B TFR2 SAP25 MOSPD3 C7orf43 MIR6840
nsv831075 Chr.7:101049016 - 101273737 on Build GRCh38 Loss MUC17 AP1S1 MOGAT3 VGF NAT16 SERPINE1 TRIM56 MIR4653 CLDN15 FIS1 ZNHIT1 PLOD3
nsv607974 Chr.7:101149529 - 101328323 on Build GRCh38 Loss AP1S1 MOGAT3 VGF LOC101927721 IFT22 NAT16 MIR4653 CLDN15 FIS1 ZNHIT1 LOC101927746 PLOD3
nsv970915 Chr.7:101203715 - 101208789 on Build GRCh38 Duplication PLOD3
nsv1018841 Chr.7:101117129 - 101225018 on Build GRCh38 Gain AP1S1 MOGAT3 VGF NAT16 SERPINE1 MIR4653 ZNHIT1 PLOD3
nsv831076 Chr.7:101185566 - 101368393 on Build GRCh38 Loss COL26A1 MOGAT3 LOC101927721 IFT22 CLDN15 FIS1 ZNHIT1 LOC101927746 PLOD3

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More Information


Additional Information:

For this assay, SNP(s) [rs78594054] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

protein modifying enzyme

Gene Ontology Categories:

Function(s) Process(es)


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