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See other CPSF3L CNV Assays ›
Gene Symbol
CPSF3L
Assay Reference Genome
Location

Chr.1:1313758 on build GRCh38
Cytoband
1p36.33
Assay ID Hs00594131_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 54973

Gene Name:

 cleavage and polyadenylation specific factor 3-like

Gene Aliases:

 CPSF73L, INT11, INTS11, RC-68, RC68

Location:

 Chr.1:1311585-1324687 on Build GRCh38

Assay Gene Location:

 Within Exon 11
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CPSF3L NM_001256456.1 11 1483 NP_001243385.1
NM_001256460.1 10 1117 NP_001243389.1
NM_001256462.1 7 716 NP_001243391.1
NM_001256463.1 7 707 NP_001243392.1
NM_017871.5 9 1010 NP_060341.2
XM_011541647.1 11 1161 XP_011539949.1
XM_011541648.1 11 1165 XP_011539950.1
XM_011541650.1 9 890 XP_011539952.1
XM_017001557.1 10 966 XP_016857046.1
XM_017001558.1 11 1020 XP_016857047.1
AK000549.1 1 154 BAA91246.1
AK021939.1 7 673 BAB13943.1
AK023356.1 9 928 BAB14541.1
AK056652.1 11 1405
AK058018.1 7 682
AK092190.1 6 743
AK123641.1 1 1413
AK291387.1 11 1446
AK297350.1 10 1067
AL136813.1 9 989 CAB66747.1
BC000675.2 6 550 AAH00675.2
BC007978.2 9 972 AAH07978.1
BC008041.2 6 607 AAH08041.1
BC013904.2 5 419 AAH13904.2
BC020199.1 6 607 AAH20199.1
CR533557.1 9 931 CAG38588.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC107985729 MIB2 TMEM88B LOC105378949 KLHL17 LINC01128 LOC102724312 CDK11A HES4 LOC100506504 TMEM240 C1orf159 OR4F29 SAMD11 PERM1 MIR1302-2 LOC107984841 WASH7P GNB1 AURKAIP1 MRPL20 MIR6859-1 MXRA8 TNFRSF4 LOC284600 ATAD3A LOC105378948 FNDC10 RNF223 MIR200A DDX11L1 CALML6 MIR6808 MIR6723 LOC100130417 LINC01342 MIR429 CCNL2 MIR200B CPSF3L FAM138A TTLL10 PLEKHN1 SSU72 ATAD3C ATAD3B MMP23B SLC35E2 MTND2P28 UBE2J2 FAM41C SDF4 FAM132A ISG15 LOC729737 SLC35E2B CDK11B TMEM52 LOC100133331 LOC107985728 VWA1 PRKCZ LOC105378592 LOC100288069 B3GALT6 NADK LOC148413 NOC2L CPTP MTND1P23 MIR6726 LOC100132287 OR4F16 LOC100287934 TTLL10-AS1 FAAP20 LOC100288175 DVL1 OR4F5 LOC105378947 LOC105378589 ACAP3 LOC101928626 LOC102725121 TAS1R3 MIR6859-2 CFAP74 MORN1 LOC100134822 AGRN TNFRSF18 MIR6727 SCNN1D LOC100129534 SKI LOC105378591 MMP23A PUSL1 ANKRD65 LINC00115 GABRD FAM87B
nsv544971 Chr.1:1294063 - 1351426 on Build GRCh38 Loss DVL1 PUSL1 TAS1R3 CPTP MIR6808 MIR6727 ACAP3 CPSF3L MIR6726
nsv544969 Chr.1:1290683 - 1374597 on Build GRCh38 Loss DVL1 PUSL1 TAS1R3 CPTP MIR6808 AURKAIP1 MXRA8 MIR6727 ACAP3 CPSF3L SCNN1D MIR6726
nsv997291 Chr.1:1306835 - 1376336 on Build GRCh38 Gain DVL1 PUSL1 TAS1R3 CPTP MIR6808 AURKAIP1 MXRA8 MIR6727 ACAP3 CPSF3L
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss DVL1 RNF223 MIR200A MIR6808 ACAP3 TAS1R3 LINC01342 MIR429 MIR200B CPSF3L TTLL10 B3GALT6 C1orf159 TNFRSF18 CPTP MIR6727 SCNN1D MIR6726 UBE2J2 SDF4 PUSL1 FAM132A AURKAIP1 MXRA8 TNFRSF4 TTLL10-AS1
dgv6n100 Chr.1:1301750 - 1362354 on Build GRCh38 Gain+Loss DVL1 PUSL1 TAS1R3 CPTP MIR6808 MXRA8 MIR6727 ACAP3 CPSF3L
nsv1160788 Chr.1:1282706 - 1376336 on Build GRCh38 Deletion DVL1 PUSL1 TAS1R3 CPTP MIR6808 AURKAIP1 MXRA8 MIR6727 ACAP3 CPSF3L SCNN1D MIR6726
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication LOC100288175 LOC105378948 RNF223 MIR200A ACAP3 TAS1R3 LINC01342 MIR429 MIR200B AGRN CPSF3L TTLL10 B3GALT6 C1orf159 TNFRSF18 CPTP MIR6727 SCNN1D MIR6726 UBE2J2 SDF4 PUSL1 FAM132A TNFRSF4 TTLL10-AS1
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC107985729 MIB2 SLC35E2B CDK11B TMEM88B LOC107985728 KLHL17 LINC01128 LOC102724312 VWA1 CDK11A HES4 LOC100288069 B3GALT6 TMEM240 NADK LOC148413 C1orf159 NOC2L CPTP SAMD11 PERM1 MIR6726 AURKAIP1 MRPL20 LOC100287934 MXRA8 TNFRSF4 TTLL10-AS1 LOC284600 ATAD3A LOC100288175 LOC105378948 DVL1 FNDC10 RNF223 MIR200A MIR6808 ACAP3 TAS1R3 LOC100130417 LINC01342 MIR429 CCNL2 MIR200B AGRN CPSF3L TTLL10 PLEKHN1 SSU72 ATAD3C TNFRSF18 ATAD3B MMP23B SLC35E2 MIR6727 SCNN1D UBE2J2 FAM41C SDF4 MMP23A PUSL1 ANKRD65 FAM132A LINC00115 ISG15 FAM87B
esv3890636 Chr.1:1304555 - 1353203 on Build GRCh38 Loss DVL1 PUSL1 TAS1R3 CPTP MIR6808 MXRA8 MIR6727 ACAP3 CPSF3L
nsv1000169 Chr.1:1281678 - 1362354 on Build GRCh38 Gain DVL1 PUSL1 TAS1R3 CPTP MIR6808 MXRA8 MIR6727 ACAP3 CPSF3L SCNN1D MIR6726
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion LOC107985729 MIB2 DVL1 FNDC10 CDK11B TMEM88B MIR200A MIR6808 ACAP3 TAS1R3 LOC102724312 VWA1 LINC01342 MIR429 CCNL2 MIR200B CPSF3L TTLL10 B3GALT6 TMEM240 SSU72 ATAD3C LOC148413 C1orf159 TNFRSF18 ATAD3B CPTP MMP23B MIR6727 SCNN1D MIR6726 UBE2J2 SDF4 PUSL1 ANKRD65 FAM132A AURKAIP1 MRPL20 MXRA8 TNFRSF4 TTLL10-AS1 ATAD3A
esv2758912 Chr.1:1263940 - 1384492 on Build GRCh38 Loss DVL1 CPTP MIR6808 MIR6727 ACAP3 SCNN1D MIR6726 UBE2J2 PUSL1 TAS1R3 AURKAIP1 MXRA8 CPSF3L
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain LOC100288175 LOC105378948 DVL1 RNF223 TMEM88B MIR200A MIR6808 ACAP3 LOC107985728 TAS1R3 KLHL17 LOC100130417 LINC01342 MIR429 CCNL2 MIR200B AGRN CPSF3L HES4 TTLL10 B3GALT6 PLEKHN1 LOC148413 C1orf159 NOC2L TNFRSF18 CPTP MIR6727 SAMD11 PERM1 SCNN1D MIR6726 UBE2J2 SDF4 PUSL1 ANKRD65 FAM132A ISG15 AURKAIP1 MRPL20 MXRA8 TNFRSF4 TTLL10-AS1 LOC284600
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain TTLL10 B3GALT6 MIR200A TNFRSF18 MIR6727 ACAP3 SCNN1D MIR6726 UBE2J2 SDF4 PUSL1 FAM132A MIR429 MIR200B TNFRSF4 TTLL10-AS1 CPSF3L

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Function(s) Process(es)


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