Assay Details
Target Gene Details
Entrez Gene ID: | 8888 |
Gene Name: | minichromosome maintenance complex component 3 associated protein |
Gene Aliases: |
GANP, MAP80, SAC3 |
Location: |
Chr.21:46235125-46286274 on Build GRCh38 |
Assay Gene Location: | Within Intron 27 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
MCM3AP | NM_003906.4 | NP_003897.2 | ||
XM_005261203.4 | XP_005261260.1 | |||
XM_005261204.4 | XP_005261261.1 | |||
XM_005261205.3 | XP_005261262.1 | |||
AB005543.1 | BAA25170.1 | |||
AB011144.1 | BAA25498.1 | |||
AJ010089.1 | CAB52687.1 | |||
AK026578.1 | ||||
AK095181.1 | ||||
AK126313.1 | ||||
AK127239.1 | ||||
AK304208.1 | ||||
BC004497.2 | AAH04497.2 | |||
BC013285.2 | AAH13285.2 | |||
BC104958.1 | AAI04959.1 | |||
BC104960.1 | AAI04961.1 |
Target Gene Details
Entrez Gene ID: | 114044 |
Gene Name: | MCM3AP antisense RNA 1 |
Gene Aliases: |
C21orf85, MCM3AP-AS, MCM3APAS, MCM3APASB, NCRNA00031 |
Location: |
Chr.21:46229231-46251701 on Build GRCh38 |
Assay Gene Location: | Within Intron 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
MCM3AP-AS1 | NR_002776.4 | |||
NR_110565.1 | ||||
NR_110566.1 | ||||
NR_110567.1 | ||||
AF426263.1 | ||||
AK001370.1 | ||||
BC059792.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv587968 | Chr.21:46237631 - 46238705 on Build GRCh38 | Gain+Loss | MCM3AP-AS1 MCM3AP |
esv3647165 | Chr.21:46237437 - 46238758 on Build GRCh38 | Loss | MCM3AP-AS1 MCM3AP |
dgv7928n54 | Chr.21:46237884 - 46238705 on Build GRCh38 | Loss | MCM3AP-AS1 MCM3AP |
esv8319 | Chr.21:46237249 - 46239001 on Build GRCh38 | Loss | MCM3AP-AS1 MCM3AP |
esv3557870 | Chr.21:46237354 - 46238764 on Build GRCh38 | Deletion | MCM3AP-AS1 MCM3AP |
nsv1072612 | Chr.21:46237375 - 46238753 on Build GRCh38 | Deletion | MCM3AP-AS1 MCM3AP |
nsv519904 | Chr.21:46163592 - 46461396 on Build GRCh38 | Loss | C21orf58 YBEY MCM3AP-AS1 PCNT MCM3AP LSS DIP2A SPATC1L |
nsv470910 | Chr.21:45933861 - 46665076 on Build GRCh38 | Gain | DIP2A-IT1 S100B YBEY MCM3AP-AS1 PRMT2 DIP2A LOC101928796 C21orf58 COL6A1 FTCD PCNT COL6A2 PCBP3 MCM3AP LSS SPATC1L |
esv22993 | Chr.21:46237604 - 46238758 on Build GRCh38 | Loss | MCM3AP-AS1 MCM3AP |
esv2393806 | Chr.21:46237243 - 46238937 on Build GRCh38 | Deletion | MCM3AP-AS1 MCM3AP |
nsv1060978 | Chr.21:46068159 - 46413726 on Build GRCh38 | Gain | C21orf58 FTCD YBEY MCM3AP-AS1 PCNT COL6A2 MCM3AP LSS SPATC1L |
dgv7927n54 | Chr.21:46237682 - 46238705 on Build GRCh38 | Gain | MCM3AP-AS1 MCM3AP |
esv2641041 | Chr.21:46236589 - 46239240 on Build GRCh38 | Deletion | MCM3AP-AS1 MCM3AP |
More Information
Additional Information:
For this assay, SNP(s) [rs77342244] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |