Assay Details
Target Gene Details
Entrez Gene ID: | 26168 |
Gene Name: | SUMO1/sentrin/SMT3 specific peptidase 3 |
Gene Aliases: |
SMT3IP1, SSP3, Ulp1 |
Location: |
Chr.17:7561992-7571969 on Build GRCh38 |
Assay Gene Location: | Within Intron 7 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SENP3 | NM_015670.5 | NP_056485.2 | ||
AF199459.1 | AAL25652.1 | |||
AL050283.1 | CAB43384.2 | |||
AL834294.1 | CAD38967.1 | |||
AY008763.1 | AAG33252.1 | |||
BC048306.1 | AAH48306.1 | |||
BC080658.1 | AAH80658.1 |
Target Gene Details
Entrez Gene ID: | 100533955 |
Gene Name: | SENP3-EIF4A1 readthrough (NMD candidate) |
Gene Aliases: |
- |
Location: |
Chr.17:7561992-7579006 on Build GRCh38 |
Assay Gene Location: | Within Intron 7 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SENP3-EIF4A1 | NR_037926.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2422288 | Chr.17:6789933 - 7646709 on Build GRCh38 | Deletion | CLEC10A TEKT1 ELP5 EIF4A1 TMEM256-PLSCR3 GABARAP FXR2 MIR497HG PLSCR3 CHRNB1 CD68 TMEM102 RNASEK-C17orf49 MIR195 ALOX12P2 ALOX12-AS1 ASGR1 TNK1 SLC35G6 SLC2A4 TNFSF12 MIR497 BCL6B FBXO39 DVL2 RNASEK ALOX12 TMEM256 ATP1B2 SNORD10 C17orf74 ASGR2 TNFSF13 TNFSF12-TNFSF13 NLGN2 SLC16A13 C17orf49 SPEM1 EIF5A FGF11 MIR324 PHF23 SNORA48 ACADVL CLDN7 SENP3-EIF4A1 SLC16A11 KCTD11 CTDNEP1 SENP3 SOX15 ZBTB4 TMEM95 SHBG DLG4 YBX2 SNORA67 LOC100996842 POLR2A LOC107983988 ACAP1 GPS2 NEURL4 MPDU1 SAT2 |
nsv574322 | Chr.17:7010333 - 7689462 on Build GRCh38 | Loss | CLEC10A ELP5 EIF4A1 WRAP53 TMEM256-PLSCR3 GABARAP FXR2 MIR497HG PLSCR3 CHRNB1 CD68 TMEM102 RNASEK-C17orf49 MIR195 ALOX12-AS1 ASGR1 TNK1 SLC35G6 SLC2A4 TNFSF12 MIR497 BCL6B DVL2 RNASEK ALOX12 TMEM256 ATP1B2 SNORD10 C17orf74 ASGR2 TNFSF13 TNFSF12-TNFSF13 NLGN2 SLC16A13 C17orf49 SPEM1 EIF5A FGF11 MIR324 PHF23 SNORA48 ACADVL CLDN7 SENP3-EIF4A1 SLC16A11 KCTD11 CTDNEP1 SENP3 SOX15 ZBTB4 TMEM95 SHBG DLG4 YBX2 SNORA67 LOC100996842 POLR2A LOC107983988 TP53 ACAP1 GPS2 NEURL4 MPDU1 SAT2 |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |