Assay Details
Target Gene Details
Entrez Gene ID: | 23359 |
Gene Name: | family with sequence similarity 189 member A1 |
Gene Aliases: |
TMEM228 |
Location: |
Chr.15:29120252-29570723 on Build GRCh38 |
Assay Gene Location: | Within Intron 5 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
FAM189A1 | NM_015307.1 | NP_056122.1 | ||
XM_011521407.2 | XP_011519709.1 | |||
AB011146.1 | BAA25500.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv1040778 | Chr.15:28689598 - 30515727 on Build GRCh38 | Loss | PDCD6IPP2 LOC101060569 LOC100289656 LOC107984752 APBA2 LOC105370751 ULK4P3 WHAMMP2 NSMCE3 GOLGA8T GOLGA6L7P CHRFAM7A LOC100130111 DKFZP434L187 GOLGA8M TJP1 FAM189A1 GOLGA8R LOC105370746 GOLGA8J |
nsv527255 | Chr.15:28754022 - 30074044 on Build GRCh38 | Gain | PDCD6IPP2 LOC100130111 LOC100289656 TJP1 LOC107984752 APBA2 FAM189A1 WHAMMP2 NSMCE3 GOLGA6L7P |
esv2751526 | Chr.15:28724519 - 30687025 on Build GRCh38 | Loss | LOC101927579 ULK4P2 ARHGAP11B LOC105370751 NSMCE3 GOLGA8T LOC100996413 LOC100130111 DKFZP434L187 LOC100288637 LOC105370746 PDCD6IPP2 LOC101060569 LOC100289656 LOC107984752 APBA2 ULK4P3 WHAMMP2 GOLGA6L7P CHRFAM7A GOLGA8H TJP1 FAM189A1 GOLGA8R GOLGA8J |
nsv1039798 | Chr.15:28724126 - 30158154 on Build GRCh38 | Gain | PDCD6IPP2 LOC100289656 LOC107984752 APBA2 ULK4P3 WHAMMP2 NSMCE3 GOLGA8T GOLGA6L7P LOC100130111 TJP1 FAM189A1 GOLGA8J |
nsv568675 | Chr.15:29035149 - 29916451 on Build GRCh38 | Gain | LOC100130111 TJP1 APBA2 FAM189A1 NSMCE3 |
nsv524362 | Chr.15:29089598 - 29155854 on Build GRCh38 | Loss | APBA2 FAM189A1 |
More Information
Additional Information:
For this assay, SNP(s) [rs80335077] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |