Assay Details
Target Gene Details
Entrez Gene ID: | 57333 |
Gene Name: | reticulocalbin 3 |
Gene Aliases: |
RLP49 |
Location: |
Chr.19:49527579-49543638 on Build GRCh38 |
Assay Gene Location: | Within Intron 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
RCN3 | NM_020650.2 | NP_065701.2 | ||
XM_005259089.3 | XP_005259146.1 | |||
XM_011527143.1 | XP_011525445.1 | |||
XM_017027023.1 | XP_016882512.1 | |||
AF183423.1 | AAG09692.1 | |||
AY195859.1 | AAO43054.1 | |||
AY358423.1 | AAQ88789.1 | |||
BC013436.1 | AAH13436.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss | NTN5 SCAF1 SNAR-C1 SIGLEC16 ADM5 TBC1D17 SYNGR4 NOSIP PPP1R15A KCNJ14 PRMT1 MED25 LHB SNAR-A5 PRRG2 SNORD32A SNRNP70 RUVBL2 PLEKHA4 MAMSTR MIR4324 ZNF473 LOC101928295 GRIN2D KDELR1 CGB3 SNAR-A1 BCAT2 SNAR-C4 FUT1 ELSPBP1 TMEM143 VRK3 ALDH16A1 MIR4750 CGB8 SNAR-C2 SPHK2 GYS1 SLC6A16 RRAS RPS11 LOC105372430 GRWD1 IL4I1 NUCB1-AS1 SNAR-C5 C19orf73 CARD8 IRF3 IZUMO1 ZNF114 TULP2 SNORD34 SNAR-A12 MIR6798 SNAR-A14 LOC101059948 HSD17B14 PTOV1-AS2 FUT2 BAX MIR5088 BSPH1 SIGLEC11 SNORD35B LIG1 LOC100287477 CGB7 CCDC114 LMTK3 SNAR-D CGB1 FLJ26850 SLC17A7 CYTH2 EMP3 DBP NUP62 SNAR-A7 TEAD2 SNAR-A6 MIR6800 PPFIA3 CABP5 MIR6799 LOC105447645 TRPM4 FTL CD37 SNAR-C3 SNAR-A9 CGB5 SNAR-A10 SNAR-A11 CA11 SNAR-A8 TSKS NUCB1 ATF5 MIR4751 SPACA4 AP2A1 SNAR-A4 C19orf68 BCL2L12 CGB2 PTOV1-AS1 FUZ FCGRT DKKL1 FLT3LG SNAR-A3 MIR150 LIN7B RCN3 KCNA7 PLA2G4C-AS1 SNAR-G1 RASIP1 FAM83E SNAR-G2 PIH1D1 CPT1C SNAR-B2 SNORD33 SNORD35A PTH2 SEC1P RPL13A HRC AKT1S1 PTOV1 NTF4 SULT2B1 FGF21 GFY SNAR-A2 SNAR-A13 SNAR-B1 DHDH PLA2G4C PRR12 CCDC155 RPL18 MIR4749 PNKP CARD8-AS1 |
nsv833863 | Chr.19:49479177 - 49629716 on Build GRCh38 | Loss | SNORD32A SNORD35B NOSIP SNORD33 SNORD35A RPS11 RPL13A FCGRT PRR12 FLT3LG MIR150 RCN3 SNORD34 PRRG2 |
nsv833862 | Chr.19:49448789 - 49570676 on Build GRCh38 | Loss | ALDH16A1 SNORD32A PIH1D1 SNORD35B NOSIP SNORD33 SNORD35A RPS11 RPL13A FCGRT FLT3LG MIR150 RCN3 SNORD34 |
nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion | SCAF1 ADM5 CPT1C NOSIP SNORD33 SNORD35A MIR6800 RRAS RPS11 RPL13A MIR6799 IRF3 PRMT1 MED25 SNORD34 PRRG2 SNORD32A TSKS AP2A1 MIR5088 BCL2L12 SNORD35B PTOV1-AS1 FUZ FCGRT PRR12 MIR150 RCN3 |
More Information
Additional Information:
For this assay, SNP(s) [rs79476680] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |