Assay Details
Target Gene Details
Entrez Gene ID: | 57333 |
Gene Name: | reticulocalbin 3 |
Gene Aliases: |
RLP49 |
Location: |
Chr.19:49527579-49543638 on Build GRCh38 |
Assay Gene Location: | Within Intron 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
RCN3 | NM_020650.2 | NP_065701.2 | ||
XM_005259089.3 | XP_005259146.1 | |||
XM_011527143.1 | XP_011525445.1 | |||
XM_017027023.1 | XP_016882512.1 | |||
AF183423.1 | AAG09692.1 | |||
AY195859.1 | AAO43054.1 | |||
AY358423.1 | AAQ88789.1 | |||
BC013436.1 | AAH13436.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss | SNAR-C3 CARD8 NTN5 FLJ26850 MIR6798 SNAR-G2 PIH1D1 LIN7B PLA2G4C BCL2L12 ATF5 CA11 HSD17B14 SNAR-A14 NOSIP DHDH CYTH2 RRAS FUT2 LHB SNAR-A2 SNORD35B PLEKHA4 SNAR-A5 LOC105447645 PRRG2 SIGLEC11 MIR4324 CD37 SNAR-A3 MIR4749 CGB3 TBC1D17 SNORD34 SNAR-A12 MIR6800 MIR5088 GYS1 KCNJ14 DBP SCAF1 PTOV1-AS1 CARD8-AS1 FAM83E PTOV1-AS2 CPT1C SYNGR4 PRR12 SNAR-G1 IRF3 NTF4 SNAR-B1 MIR4750 SNAR-A11 C19orf73 LIG1 PLA2G4C-AS1 RPL18 SPACA4 RCN3 VRK3 DKKL1 NUCB1 RUVBL2 ZNF473 CGB1 SNORD33 MED25 IL4I1 AP2A1 MIR4751 CCDC114 NUCB1-AS1 SNAR-A9 SNAR-A1 SNAR-C4 FCGRT FUZ TULP2 GRWD1 KCNA7 LOC105372430 SLC17A7 TRPM4 PRMT1 TEAD2 FLT3LG C19orf68 SNAR-A13 SNAR-A10 CCDC155 FUT1 BAX SNAR-D SLC6A16 SNAR-B2 CGB7 GRIN2D FTL TMEM143 IZUMO1 LOC100287477 PTH2 PPFIA3 BSPH1 ELSPBP1 BCAT2 SNAR-A4 ZNF114 LMTK3 FGF21 PNKP SULT2B1 RPS11 AKT1S1 MIR6799 NUP62 EMP3 LOC101928295 SNAR-C1 SNAR-A7 RPL13A ALDH16A1 RASIP1 LOC101059948 SIGLEC16 HRC PTOV1 SPHK2 SNRNP70 GFY CGB8 SNORD35A SNAR-A6 CGB5 SNORD32A KDELR1 SNAR-A8 TSKS SNAR-C5 PPP1R15A SNAR-C2 CGB2 MAMSTR MIR150 CABP5 ADM5 SEC1P |
nsv833863 | Chr.19:49479177 - 49629716 on Build GRCh38 | Loss | RPS11 SNORD33 SNORD35B FLT3LG PRRG2 SNORD35A PRR12 SNORD32A FCGRT NOSIP MIR150 RCN3 SNORD34 RPL13A |
nsv833862 | Chr.19:49448789 - 49570676 on Build GRCh38 | Loss | ALDH16A1 RPS11 SNORD33 SNORD35B FLT3LG SNORD35A PIH1D1 SNORD32A FCGRT NOSIP MIR150 RCN3 SNORD34 RPL13A |
nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion | RPS11 MIR6800 PRMT1 MIR5088 SCAF1 PTOV1-AS1 MIR6799 CPT1C PRR12 IRF3 BCL2L12 NOSIP RCN3 RRAS RPL13A SNORD33 SNORD35B MED25 AP2A1 PRRG2 SNORD35A SNORD32A FCGRT TSKS FUZ MIR150 ADM5 SNORD34 |
More Information
Additional Information:
For this assay, SNP(s) [rs78707188] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |