Assay Details
Target Gene Details
Entrez Gene ID: | 10016 |
Gene Name: | programmed cell death 6 |
Gene Aliases: |
ALG-2, ALG2, PEF1B |
Location: |
Chr.5:271621-314974 on Build GRCh38 |
Assay Gene Location: | Overlaps - Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
PDCD6 | NM_001267556.1 | NP_001254485.1 | ||
NM_001267557.1 | NP_001254486.1 | |||
NM_001267558.1 | NP_001254487.1 | |||
NM_001267559.1 | NP_001254488.1 | |||
NM_013232.3 | NP_037364.1 | |||
NR_073609.1 | ||||
AF035606.1 | AAC27697.1 | |||
AK001917.1 | ||||
AK223366.1 | BAD97086.1 | |||
AK295082.1 | ||||
AK308872.1 | ||||
AK310347.1 | ||||
AK315370.1 | ||||
BC012384.1 | AAH12384.1 | |||
BC050597.1 | AAH50597.1 | |||
BC106706.2 | AAI06707.1 | |||
BC110291.1 | AAI10292.1 | |||
BG390506.1 | ||||
BI553617.1 | ||||
CR983268.1 | ||||
DB495449.1 | ||||
U58773.1 | AAF14336.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2759315 | Chr.5:17263 - 595840 on Build GRCh38 | Loss | PLEKHG4B AHRR PDCD6 LRRC14B SLC9A3 SDHA PP7080 HRAT5 EXOC3 MIR4456 CCDC127 LOC100288152 EXOC3-AS1 |
esv3894107 | Chr.5:81322 - 801057 on Build GRCh38 | Gain | TPPP PLEKHG4B ZDHHC11B AHRR PDCD6 ZDHHC11 LRRC14B SLC9A3 SDHA PP7080 HRAT5 EXOC3 MIR4456 LOC100996325 CCDC127 LOC101929895 CEP72 LOC100288152 EXOC3-AS1 |
nsv428458 | Chr.5:93781 - 338972 on Build GRCh38 | Loss | HRAT5 PLEKHG4B AHRR PDCD6 CCDC127 LRRC14B SDHA |
esv2752083 | Chr.5:28951 - 346521 on Build GRCh38 | Gain | HRAT5 PLEKHG4B AHRR PDCD6 CCDC127 LRRC14B SDHA |
nsv518607 | Chr.5:141544 - 305917 on Build GRCh38 | Gain | HRAT5 PLEKHG4B AHRR PDCD6 CCDC127 LRRC14B SDHA |
nsv1030767 | Chr.5:154674 - 457840 on Build GRCh38 | Gain | HRAT5 PLEKHG4B EXOC3 AHRR PDCD6 CCDC127 LRRC14B SDHA EXOC3-AS1 |
nsv1018482 | Chr.5:192727 - 276085 on Build GRCh38 | Loss | HRAT5 PDCD6 CCDC127 LRRC14B SDHA |
More Information
Additional Information:
For this assay, SNP(s) [rs115979486] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Non-exonic DGV Variation |