Assay Details
Target Gene Details
Entrez Gene ID: | 29844 |
Gene Name: | TCF3 fusion partner |
Gene Aliases: |
FB1, INO80F, amida |
Location: |
Chr.19:54107013-54115675 on Build GRCh38 |
Assay Gene Location: | Within Exon 6 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TFPT | NM_001321792.1 | 5 | 615 | NP_001308721.1 |
NM_013342.3 | 5 | 1009 | NP_037474.1 | |
XM_005278261.1 | 4 | 485 | XP_005278318.1 | |
AF052052.1 | 6 | 882 | AAD45182.1 | |
BC004281.1 | 5 | 641 | AAH04281.1 | |
BC007776.2 | 5 | 627 | AAH07776.1 | |
BQ027375.1 | 2 | 215 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv1056177 | Chr.19:54073048 - 54112306 on Build GRCh38 | Gain | NDUFA3 TARM1 OSCAR TFPT |
nsv510773 | Chr.19:54017180 - 54132236 on Build GRCh38 | Deletion | PRPF31 NDUFA3 TARM1 VSTM1 OSCAR TFPT |
nsv515623 | Chr.19:54102901 - 54179150 on Build GRCh38 | Loss | MBOAT7 PRPF31 NDUFA3 CNOT3 TMC4 LENG1 TFPT |
nsv953613 | Chr.19:54097214 - 54198733 on Build GRCh38 | Deletion | MBOAT7 PRPF31 NDUFA3 CNOT3 TMC4 OSCAR LENG1 TSEN34 TFPT |
esv2718812 | Chr.19:53184636 - 54322450 on Build GRCh38 | Deletion | MIR512-2 DPRX ZNF525 CNOT3 TARM1 MIR518A2 ZNF813 MIR520B LENG1 VN1R4 MIR525 LILRA5 MIR524 MIR1283-1 ZNF665 MIR520H TMC4 CACNG7 MIR519A2 MIR371A MIR520F ZNF765 LILRB3 LILRB2 PRKCG MIR519C MIR515-1 ZNF761 MIR516B2 MIR517C MIR371B MIR935 MIR517A MIR522 MIR518F MIR518E MIR518A1 LOC105372457 MIR1323 MIR520D LOC284379 MIR519D MIR512-1 MIR518D NLRP12 MIR527 MIR519B MIR526A2 MIR526A1 MIR526B MBOAT7 ZNF331 CACNG6 MIR515-2 VN1R2 ZNF677 MIR4752 OSCAR RPS9 MIR523 LILRB5 MIR520G MIR516B1 MIR516A1 MIR498 MIR516A2 MIR520C MYADM NDUFA3 BIRC8 MIR1283-2 MIR519E TSEN34 TFPT MIR519A1 MIR521-1 MIR517B MIR518B MIR518C ZNF845 FAM90A27P MIR521-2 PRPF31 TPM3P9 VSTM1 MIR372 CACNG8 MIR520E LILRA6 MIR520A ZNF818P MIR373 |
nsv470157 | Chr.19:54063999 - 54127773 on Build GRCh38 | Loss | PRPF31 NDUFA3 TARM1 OSCAR TFPT |
esv3893246 | Chr.19:54081109 - 54111207 on Build GRCh38 | Gain | NDUFA3 TARM1 OSCAR TFPT |
nsv833877 | Chr.19:53951529 - 54117323 on Build GRCh38 | Loss | CACNG8 PRPF31 NDUFA3 CACNG6 TARM1 VSTM1 MIR935 OSCAR TFPT |
More Information
Additional Information:
For this assay, SNP(s) [rs140973668] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |