Assay Details
Target Gene Details
Entrez Gene ID: | 146712 |
Gene Name: | UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1 |
Gene Aliases: |
3-Gn-T8, B3GNT8, BGnT-8, beta-1, beta3Gn-T8, beta3GnTL1 |
Location: |
Chr.17:82942149-83051845 on Build GRCh38 |
Assay Gene Location: | Within Exon 20 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
B3GNTL1 | NM_001009905.2 | 13 | 2093 | NP_001009905.1 |
NM_001320742.1 | 14 | 2211 | NP_001307671.1 | |
NM_001320743.1 | 9 | 2688 | NP_001307672.1 | |
NR_135465.1 | 14 | 2448 | ||
NR_135466.1 | ||||
AK054757.1 |
Target Gene Details
Entrez Gene ID: | 6904 |
Gene Name: | tubulin folding cofactor D |
Gene Aliases: |
SSD-1, tfcD |
Location: |
Chr.17:82752048-82943186 on Build GRCh38 |
Assay Gene Location: | Within Exon 56 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TBCD | NM_005993.4 | 39 | 4327 | NP_005984.3 |
XM_005256399.4 | 27 | 3124 | XP_005256456.1 | |
XM_005256404.4 | 27 | 3166 | XP_005256461.1 | |
XM_006722290.2 | 38 | 4224 | XP_006722353.1 | |
XM_006722291.3 | 27 | 3448 | XP_006722354.1 | |
XM_006722292.2 | 25 | 2860 | XP_006722355.1 | |
XM_011523589.1 | 34 | 3867 | XP_011521891.1 | |
XM_011523590.1 | 34 | 3948 | XP_011521892.1 | |
XM_011523591.1 | 34 | 3852 | XP_011521893.1 | |
XM_011523593.1 | 33 | 3459 | XP_011521895.1 | |
XM_011523594.1 | 26 | 2929 | XP_011521896.1 | |
XM_011523595.2 | 26 | 3007 | XP_011521897.1 | |
XM_011523597.2 | 24 | 3660 | XP_011521899.1 | |
XM_011523598.1 | 24 | 2718 | XP_011521900.1 | |
XM_011523599.2 | 24 | 3436 | XP_011521901.1 | |
XM_011523600.2 | 25 | 2880 | XP_011521902.1 | |
XM_017024989.1 | 23 | 2574 | XP_016880478.1 | |
XM_017024990.1 | 27 | 2946 | XP_016880479.1 | |
AK057975.1 | 20 | 2205 | ||
BC012824.2 | 12 | 1784 | AAH12824.2 | |
BG254219.1 | 1 | 294 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv1067553 | Chr.17:82530808 - 83091923 on Build GRCh38 | Loss | LOC101929552 LOC105371944 FN3K ZNF750 B3GNTL1 TBCD LOC105376791 RAB40B METRNL MIR4525 FN3KRP WDR45B FOXK2 |
dgv3296n100 | Chr.17:82851564 - 83091923 on Build GRCh38 | Gain | B3GNTL1 TBCD METRNL LOC105371944 |
nsv428351 | Chr.17:81152631 - 83064073 on Build GRCh38 | Gain | PDE6G MIR6786 TEX19 NPLOC4 MAFG-AS1 MIR3186 C17orf89 SLC38A10 MIR6787 TEPSIN MYADML2 SECTM1 LOC105376791 UTS2R CSNK1D LOC101929511 MRPL12 AATK MAFG MIR4525 DCXR AATK-AS1 STRA13 GCGR CEP131 ACTG1 RFNG PCYT2 FN3K ARHGDIA RAC3 PYCR1 LOC105371925 SIRT7 FSCN2 NPB ANAPC11 FN3KRP OXLD1 OGFOD3 LOC101929552 NOTUM ARL16 HGS TSPAN10 TMEM105 HEXDC MCRIP1 MIR4740 CCDC57 RAB40B CD7 FOXK2 ALYREF SLC25A10 SNORD134 GPS1 FASN P4HB SLC16A3 PPP1R27 FAAP100 BAHCC1 LOC105371944 LRRC45 ZNF750 NARF LOC105376790 DUS1L B3GNTL1 TBCD ASPSCR1 LINC00482 C17orf62 LOC100130370 CCDC137 WDR45B |
nsv576217 | Chr.17:82937869 - 82960820 on Build GRCh38 | Loss | B3GNTL1 TBCD LOC105371944 |
dgv3297n100 | Chr.17:82879855 - 83048753 on Build GRCh38 | Gain | B3GNTL1 TBCD LOC105371944 |
esv3893052 | Chr.17:82895301 - 83102003 on Build GRCh38 | Gain | B3GNTL1 TBCD METRNL LOC105371944 |
nsv1057153 | Chr.17:82876571 - 83091923 on Build GRCh38 | Loss | B3GNTL1 TBCD METRNL LOC105371944 |
esv21913 | Chr.17:81828123 - 83103548 on Build GRCh38 | Gain+Loss | TEX19 MAFG-AS1 MIR6787 MYADML2 SECTM1 LOC105376791 UTS2R CSNK1D LOC101929511 MAFG MIR4525 DCXR STRA13 RFNG PCYT2 FN3K ARHGDIA RAC3 PYCR1 SIRT7 METRNL NPB ANAPC11 FN3KRP OGFOD3 LOC101929552 NOTUM HEXDC MCRIP1 CCDC57 RAB40B CD7 FOXK2 ALYREF SNORD134 GPS1 FASN P4HB SLC16A3 PPP1R27 LOC105371944 LRRC45 ZNF750 NARF LOC105376790 DUS1L B3GNTL1 TBCD ASPSCR1 C17orf62 WDR45B |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |