Assay Details
Target Gene Details
Entrez Gene ID: | 79680 |
Gene Name: | chromosome 22 open reading frame 29 |
Gene Aliases: |
BOP |
Location: |
Chr.22:19846138-19854848 on Build GRCh38 |
Assay Gene Location: | Within Exon 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
C22orf29 | NM_024627.5 | 3 | 3774 | NP_078903.3 |
BX640785.1 | 2 | 3863 | CAE45875.1 | |
BX640969.1 | 3 | 3743 | CAE45984.1 | |
BX640998.1 | 3 | 3743 | CAE46001.1 |
Target Gene Details
Entrez Gene ID: | 54584 |
Gene Name: | G protein subunit beta 1 like |
Gene Aliases: |
DGCRK3, FKSG1, GY2, WDR14, WDVCF |
Location: |
Chr.22:19788411-19854939 on Build GRCh38 |
Assay Gene Location: | Within Intron 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
GNB1L | NM_053004.2 | NP_443730.1 | ||
AB051432.1 | ||||
AF238328.1 | AAG36826.1 | |||
AF301895.1 | AAG53933.1 | |||
AY007378.1 | AAG12162.1 | |||
BC012060.1 | AAH12060.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv834129 | Chr.22:19705617 - 19919068 on Build GRCh38 | Loss | GNB1L TBX1 TXNRD2 SEPT5 C22orf29 GP1BB SEPT5-GP1BB |
nsv953024 | Chr.22:19842078 - 19854877 on Build GRCh38 | Deletion | GNB1L C22orf29 |
esv3893434 | Chr.22:19470889 - 20343372 on Build GRCh38 | Gain | MIR1306 C22orf29 CDC45 MIR6816 GNB1L MIR185 GP1BB DGCR6L RANBP1 MIR1286 LOC440792 CCDC188 SEPT5-GP1BB COMT MIR4761 LOC101927859 DGCR8 LOC284865 TRMT2A MIR3618 TBX1 ARVCF TXNRD2 SEPT5 LINC00895 ZDHHC8 UFD1L RTN4R LINC00896 TANGO2 CLDN5 |
nsv828939 | Chr.22:19696032 - 20324465 on Build GRCh38 | Loss | MIR1306 C22orf29 MIR6816 GNB1L MIR185 GP1BB DGCR6L RANBP1 MIR1286 LOC440792 CCDC188 SEPT5-GP1BB COMT MIR4761 DGCR8 LOC284865 TRMT2A MIR3618 TBX1 ARVCF TXNRD2 SEPT5 ZDHHC8 RTN4R LINC00896 TANGO2 |
nsv828938 | Chr.22:19691069 - 20324465 on Build GRCh38 | Gain | MIR1306 C22orf29 MIR6816 GNB1L MIR185 GP1BB DGCR6L RANBP1 MIR1286 LOC440792 CCDC188 SEPT5-GP1BB COMT MIR4761 DGCR8 LOC284865 TRMT2A MIR3618 TBX1 ARVCF TXNRD2 SEPT5 ZDHHC8 RTN4R LINC00896 TANGO2 |
nsv834130 | Chr.22:19837923 - 19940567 on Build GRCh38 | Loss | GNB1L TXNRD2 C22orf29 |
esv3568260 | Chr.22:19777375 - 19881883 on Build GRCh38 | Loss | GNB1L TBX1 TXNRD2 C22orf29 |
esv3647279 | Chr.22:19719848 - 19878980 on Build GRCh38 | Gain | GNB1L TBX1 TXNRD2 SEPT5 C22orf29 GP1BB SEPT5-GP1BB |
dgv7983n54 | Chr.22:19762002 - 20321870 on Build GRCh38 | Gain | MIR4761 MIR1306 C22orf29 DGCR8 LOC284865 TRMT2A MIR6816 MIR3618 GNB1L TBX1 MIR185 ARVCF TXNRD2 ZDHHC8 DGCR6L RANBP1 RTN4R LINC00896 MIR1286 TANGO2 LOC440792 CCDC188 COMT |
esv3575418 | Chr.22:18161776 - 19963846 on Build GRCh38 | Gain | DGCR5 GSC2 HIRA FAM230A C22orf29 DGCR9 CDC45 LOC100996432 PRODH LOC642643 DGCR11 GNB1L LINC01311 TMEM191B RIMBP3 LOC100996415 GP1BB TSSK2 USP18 LOC100996401 SEPT5-GP1BB COMT MIR4761 CLTCL1 SLC25A1 LOC102725072 DGCR6 DGCR2 DGCR14 TBX1 TXNRD2 SEPT5 LOC729461 LINC00895 MRPL40 UFD1L GGT3P PI4KAP1 DGCR10 C22orf39 CLDN5 |
More Information
Additional Information:
For this assay, SNP(s) [rs115759616,rs138852781] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic Intronic Non-exonic DGV Variation |