Assay Details
Target Gene Details
Entrez Gene ID: | 29844 |
Gene Name: | TCF3 fusion partner |
Gene Aliases: |
FB1, INO80F, amida |
Location: |
Chr.19:54107013-54115675 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 6 - Exon 7 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TFPT | NM_001321792.1 | NP_001308721.1 | ||
NM_013342.3 | NP_037474.1 | |||
XM_005278261.1 | XP_005278318.1 | |||
AF052052.1 | AAD45182.1 | |||
BC004281.1 | AAH04281.1 | |||
BC007776.2 | AAH07776.1 | |||
BQ027375.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv1056177 | Chr.19:54073048 - 54112306 on Build GRCh38 | Gain | TARM1 TFPT NDUFA3 OSCAR |
nsv510773 | Chr.19:54017180 - 54132236 on Build GRCh38 | Deletion | VSTM1 TARM1 TFPT PRPF31 NDUFA3 OSCAR |
nsv515623 | Chr.19:54102901 - 54179150 on Build GRCh38 | Loss | TMC4 TFPT PRPF31 NDUFA3 MBOAT7 LENG1 CNOT3 |
nsv953613 | Chr.19:54097214 - 54198733 on Build GRCh38 | Deletion | TMC4 TFPT PRPF31 NDUFA3 MBOAT7 TSEN34 LENG1 CNOT3 OSCAR |
esv2718812 | Chr.19:53184636 - 54322450 on Build GRCh38 | Deletion | MIR518E MIR517B MIR518C MIR518B BIRC8 MIR527 MBOAT7 MIR516B2 OSCAR LILRB5 MIR519A1 MIR519E MIR519C ZNF845 ZNF331 VN1R4 MIR512-2 MIR526A1 MIR520F MYADM MIR516A1 MIR520G TPM3P9 RPS9 DPRX ZNF818P NDUFA3 CACNG7 MIR520H MIR520B LENG1 MIR1283-2 CNOT3 MIR4752 VN1R2 MIR371B VSTM1 MIR498 TARM1 TFPT MIR518D CACNG8 CACNG6 MIR522 NLRP12 MIR517C PRKCG MIR373 LILRB2 MIR525 MIR526B MIR521-1 MIR521-2 MIR372 LILRA5 FAM90A27P ZNF665 MIR517A LOC105372457 MIR515-2 MIR515-1 LOC284379 MIR1283-1 MIR512-1 LILRA6 ZNF677 MIR519B PRPF31 TSEN34 MIR1323 MIR526A2 MIR520D ZNF761 MIR935 MIR520A MIR516B1 TMC4 LILRB3 MIR520C MIR518A1 MIR518F MIR519D ZNF765 MIR523 ZNF525 MIR518A2 ZNF813 MIR520E MIR519A2 MIR516A2 MIR524 MIR371A |
nsv470157 | Chr.19:54063999 - 54127773 on Build GRCh38 | Loss | TARM1 TFPT PRPF31 NDUFA3 OSCAR |
esv3893246 | Chr.19:54081109 - 54111207 on Build GRCh38 | Gain | TARM1 TFPT NDUFA3 OSCAR |
nsv833877 | Chr.19:53951529 - 54117323 on Build GRCh38 | Loss | MIR935 VSTM1 TARM1 TFPT CACNG8 CACNG6 PRPF31 NDUFA3 OSCAR |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |