Assay Details
Target Gene Details
Entrez Gene ID: | 55937 |
Gene Name: | apolipoprotein M |
Gene Aliases: |
G3a, HSPC336, NG20, apo-M |
Location: |
Chr.6:31652410-31658210 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 2 - Exon 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
APOM | NM_001256169.1 | NP_001243098.1 | ||
NM_019101.2 | NP_061974.2 | |||
NR_045828.1 | ||||
XM_006715150.3 | XP_006715213.1 | |||
AA846749.1 | ||||
AF118393.3 | AAD11443.2 | |||
AF161454.1 | AAF29014.1 | |||
AJ245434.1 | CAB51604.1 | |||
BC020683.1 | AAH20683.1 | |||
BF344944.1 | ||||
BG564719.1 | ||||
CB054016.1 | ||||
CN428415.1 |
Target Gene Details
Entrez Gene ID: | 7917 |
Gene Name: | BCL2 associated athanogene 6 |
Gene Aliases: |
BAG-6, BAT3, D6S52E, G3 |
Location: |
Chr.6:31639028-31660900 on Build GRCh38 |
Assay Gene Location: | Within Intron 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
BAG6 | XM_017011279.1 | XP_016866768.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv462871 | Chr.6:31607499 - 31664357 on Build GRCh38 | Loss | C6orf47 PRRC2A AIF1 MIR6832 BAG6 SNORA38 APOM GPANK1 |
nsv1126749 | Chr.6:31457323 - 32594423 on Build GRCh38 | Deletion | STK19 PRRC2A HCG26 MCCD1 LY6G6D ATP6V1G2-DDX39B LOC101929163 LOC100287329 DDAH2 CFB LY6G6F PRRT1 DXO VARS GPANK1 C6orf25 SKIV2L AGER C4B SAPCD1 ZBTB12 NEU1 CSNK2B LY6G6C C2-AS1 LST1 BAG6 PBX2 SNORD84 PPT2-EGFL8 C4A SNORD117 LY6G6E ATF6B SAPCD1-AS1 PPT2 CYP21A2 EHMT2 TNF HLA-DRB6 C6orf10 MIR6832 SLC44A4 SNORA38 HLA-DRA RNF5 CYP21A1P MIR6833 C6orf47 MICB ATP6V1G2 HCP5 MSH5-SAPCD1 LOC100507547 HLA-DRB5 LOC102725068 FKBPL MIR1236 NCR3 SNORD48 NELFE HSPA1B VWA7 CLIC1 EGFL8 MSH5 HSPA1A C6orf48 C2 LSM2 LTA LY6G5C ABHD16A MIR6721 TNXB TNXA LY6G5B LTB GPSM3 NFKBIL1 MIR4646 NOTCH4 HSPA1L AIF1 DDX39B HLA-DRB1 SNORD52 BTNL2 APOM HCG23 AGPAT1 DDX39B-AS1 |
nsv1073969 | Chr.6:31456422 - 33480523 on Build GRCh38 | Deletion | STK19 PRRC2A HCG26 LOC101929163 DDAH2 VPS52 KIFC1 CFB PRRT1 CUTA DXO ZBTB22 GPANK1 COL11A2 HLA-DOA MIR219A1 TAPBP TAP2 HCG25 RXRB PHF1 SAPCD1 LY6G6C LST1 PBX2 SNORD84 HLA-DQB1-AS1 PPT2-EGFL8 HSD17B8 HLA-DPB2 HLA-DPA1 SNORD117 ZBTB9 PSMB9 EHMT2 MIR6832 RGL2 SNORA38 HLA-DRA CYP21A1P HLA-DQB2 C6orf47 MICB ATP6V1G2 HCP5 MSH5-SAPCD1 HLA-DRB5 LOC102725068 MIR1236 NCR3 SNORD48 HCG24 B3GALT4 NELFE SLC39A7 HSPA1B CLIC1 EGFL8 MSH5 HSPA1A C2 LSM2 LY6G5C ABHD16A MIR6873 LY6G5B GPSM3 NFKBIL1 NOTCH4 HSPA1L AIF1 DDX39B HLA-DRB1 APOM DAXX MCCD1 LY6G6D ATP6V1G2-DDX39B LOC100287329 LY6G6F VARS C6orf25 SKIV2L AGER C4B HLA-DQB1 ZBTB12 HLA-DMA NEU1 HLA-DQA1 CSNK2B C2-AS1 BAG6 WDR46 C4A MIR6834 PPP1R2P1 LY6G6E RPS18 ATF6B SAPCD1-AS1 PPT2 TAP1 CYP21A2 BRD2 TNF HLA-DRB6 C6orf10 MIR3135B SLC44A4 RING1 PSMB8 PFDN6 RNF5 MIR6833 LOC100507547 FKBPL VWA7 C6orf48 HLA-DOB LTA LOC100294145 MIR6721 MIR5004 TNXB TNXA HLA-DQA2 HLA-DPB1 HLA-DMB LTB SYNGAP1 MIR4646 SNORD52 BTNL2 PSMB8-AS1 HCG23 AGPAT1 DDX39B-AS1 |
dgv10403n54 | Chr.6:31312324 - 32049763 on Build GRCh38 | Loss | STK19 PRRC2A HCG26 MCCD1 LY6G6D ATP6V1G2-DDX39B LOC100287329 DDAH2 CFB LY6G6F DXO VARS GPANK1 C6orf25 SKIV2L C4B SAPCD1 ZBTB12 NEU1 CSNK2B LY6G6C HLA-B C2-AS1 LST1 BAG6 SNORD84 C4A SNORD117 LY6G6E SAPCD1-AS1 CYP21A2 EHMT2 TNF MIR6891 MIR6832 SLC44A4 SNORA38 CYP21A1P C6orf47 MICB ATP6V1G2 HCP5 MSH5-SAPCD1 LOC102725068 MIR1236 NCR3 SNORD48 MICA NELFE HSPA1B VWA7 CLIC1 MSH5 HSPA1A C6orf48 C2 LSM2 LTA LY6G5C ABHD16A TNXB TNXA LY6G5B LTB NFKBIL1 MIR4646 HSPA1L AIF1 DDX39B SNORD52 APOM DDX39B-AS1 |
nsv1112900 | Chr.6:31455323 - 33480423 on Build GRCh38 | Deletion | STK19 PRRC2A HCG26 LOC101929163 DDAH2 VPS52 KIFC1 CFB PRRT1 CUTA DXO ZBTB22 GPANK1 COL11A2 HLA-DOA MIR219A1 TAPBP TAP2 HCG25 RXRB PHF1 SAPCD1 LY6G6C LST1 PBX2 SNORD84 HLA-DQB1-AS1 PPT2-EGFL8 HSD17B8 HLA-DPB2 HLA-DPA1 SNORD117 ZBTB9 PSMB9 EHMT2 MIR6832 RGL2 SNORA38 HLA-DRA CYP21A1P HLA-DQB2 C6orf47 MICB ATP6V1G2 HCP5 MSH5-SAPCD1 HLA-DRB5 LOC102725068 MIR1236 NCR3 SNORD48 HCG24 B3GALT4 NELFE SLC39A7 HSPA1B CLIC1 EGFL8 MSH5 HSPA1A C2 LSM2 LY6G5C ABHD16A MIR6873 LY6G5B GPSM3 NFKBIL1 NOTCH4 HSPA1L AIF1 DDX39B HLA-DRB1 APOM DAXX MCCD1 LY6G6D ATP6V1G2-DDX39B LOC100287329 LY6G6F VARS C6orf25 SKIV2L AGER C4B HLA-DQB1 ZBTB12 HLA-DMA NEU1 HLA-DQA1 CSNK2B C2-AS1 BAG6 WDR46 C4A MIR6834 PPP1R2P1 LY6G6E RPS18 ATF6B SAPCD1-AS1 PPT2 TAP1 CYP21A2 BRD2 TNF HLA-DRB6 C6orf10 MIR3135B SLC44A4 RING1 PSMB8 PFDN6 RNF5 MIR6833 LOC100507547 FKBPL VWA7 C6orf48 HLA-DOB LTA LOC100294145 MIR6721 MIR5004 TNXB TNXA HLA-DQA2 HLA-DPB1 HLA-DMB LTB SYNGAP1 MIR4646 SNORD52 BTNL2 PSMB8-AS1 HCG23 AGPAT1 DDX39B-AS1 |
dgv10404n54 | Chr.6:31312550 - 32516591 on Build GRCh38 | Loss | STK19 PRRC2A HCG26 MCCD1 LY6G6D ATP6V1G2-DDX39B LOC101929163 LOC100287329 DDAH2 CFB LY6G6F PRRT1 DXO VARS GPANK1 C6orf25 SKIV2L AGER C4B SAPCD1 ZBTB12 NEU1 CSNK2B LY6G6C HLA-B C2-AS1 LST1 BAG6 PBX2 SNORD84 PPT2-EGFL8 C4A SNORD117 LY6G6E ATF6B SAPCD1-AS1 PPT2 CYP21A2 EHMT2 TNF C6orf10 MIR6891 MIR6832 SLC44A4 SNORA38 HLA-DRA RNF5 CYP21A1P MIR6833 C6orf47 MICB ATP6V1G2 HCP5 MSH5-SAPCD1 LOC100507547 LOC102725068 FKBPL MIR1236 NCR3 SNORD48 MICA NELFE HSPA1B VWA7 CLIC1 EGFL8 MSH5 HSPA1A C6orf48 C2 LSM2 LTA LY6G5C ABHD16A MIR6721 TNXB TNXA LY6G5B LTB GPSM3 NFKBIL1 MIR4646 NOTCH4 HSPA1L AIF1 DDX39B SNORD52 BTNL2 APOM HCG23 AGPAT1 DDX39B-AS1 |
nsv1161370 | Chr.6:31600692 - 31714252 on Build GRCh38 | Deletion | PRRC2A MIR6832 BAG6 LY6G5C ABHD16A SNORA38 LY6G6F LY6G5B GPANK1 C6orf47 LY6G6E MIR4646 AIF1 APOM CSNK2B |
nsv830627 | Chr.6:31528437 - 31692173 on Build GRCh38 | Loss | PRRC2A TNF MIR6832 MCCD1 ATP6V1G2-DDX39B LOC100287329 SNORA38 GPANK1 C6orf47 ATP6V1G2 NCR3 CSNK2B LST1 LTA BAG6 SNORD84 LY6G5C ABHD16A LY6G5B LTB SNORD117 NFKBIL1 AIF1 DDX39B APOM DDX39B-AS1 |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |