Assay Details
Target Gene Details
Entrez Gene ID: | 58506 |
Gene Name: | SR-related CTD associated factor 1 |
Gene Aliases: |
SRA1 |
Location: |
Chr.19:49640483-49658649 on Build GRCh38 |
Assay Gene Location: | Within Exon 9 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SCAF1 | NM_021228.2 | 7 | 2220 | NP_067051.2 |
XM_005259122.4 | 7 | 2503 | XP_005259179.1 | |
XM_011527194.2 | 7 | 2145 | XP_011525496.1 | |
XM_017027083.1 | 4 | 1947 | XP_016882572.1 | |
AK024444.1 | 7 | 2220 | ||
BC011662.2 | AAH11662.2 | |||
BC053992.1 | 6 | 2107 | AAH53992.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv469715 | Chr.19:49572544 - 49730286 on Build GRCh38 | Gain+Loss | SCAF1 ADM5 PRRG2 PRR12 NOSIP PRMT1 RRAS CPT1C BCL2L12 MIR5088 IRF3 |
nsv833865 | Chr.19:49572545 - 49730286 on Build GRCh38 | Gain+Loss | SCAF1 ADM5 PRRG2 PRR12 NOSIP PRMT1 RRAS CPT1C BCL2L12 MIR5088 IRF3 |
nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss | SNAR-B2 CGB5 PPFIA3 AKT1S1 GRIN2D TBC1D17 DHDH PRR12 LOC101059948 MIR4750 CABP5 IL4I1 SNORD33 SIGLEC16 CCDC155 TULP2 SNAR-A11 LOC101928295 SNAR-G1 SEC1P LOC105372430 MIR6800 C19orf68 ADM5 SNORD35B SNORD32A LHB DBP PPP1R15A PTOV1-AS2 FLT3LG MIR150 PLA2G4C SNAR-A1 LOC100287477 SNAR-D PNKP SLC17A7 SNAR-C4 SULT2B1 LOC105447645 MIR4324 KCNA7 BCAT2 SNAR-A13 SNAR-C1 MAMSTR ZNF473 ZNF114 KDELR1 MIR4751 SNAR-A9 C19orf73 NTF4 MED25 PTH2 MIR4749 CYTH2 PLEKHA4 SNAR-A2 LMTK3 LIG1 RPL18 BCL2L12 SCAF1 TMEM143 SNAR-A10 SNAR-C5 SNAR-A5 BAX MIR6799 CGB8 RPL13A NUCB1 CGB3 FTL SNAR-B1 FUT1 FCGRT SNORD35A SNRNP70 CA11 SYNGR4 BSPH1 CPT1C ATF5 MIR5088 IRF3 FUZ FAM83E DKKL1 FGF21 MIR6798 LIN7B SLC6A16 CGB2 RRAS SNAR-C3 SPACA4 HSD17B14 GYS1 SNAR-A3 CD37 CARD8 IZUMO1 SNAR-A6 SNAR-A8 GFY RASIP1 SNAR-A7 KCNJ14 SNAR-C2 AP2A1 GRWD1 SPHK2 SNAR-A14 SIGLEC11 RUVBL2 HRC TRPM4 PRMT1 ELSPBP1 RCN3 TEAD2 RPS11 ALDH16A1 PTOV1-AS1 SNAR-G2 CCDC114 CGB7 SNAR-A12 EMP3 PLA2G4C-AS1 SNAR-A4 TSKS NUP62 CGB1 NUCB1-AS1 PIH1D1 SNORD34 PTOV1 PRRG2 FLJ26850 NOSIP FUT2 NTN5 CARD8-AS1 VRK3 |
nsv817854 | Chr.19:49618821 - 49726387 on Build GRCh38 | Gain | SCAF1 ADM5 PRR12 PRMT1 RRAS CPT1C BCL2L12 MIR5088 IRF3 |
nsv579909 | Chr.19:49649784 - 49659652 on Build GRCh38 | Loss | SCAF1 IRF3 |
nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion | PNKP AKT1S1 TBC1D17 PRR12 MIR4750 PRMT1 CPT1C ATF5 MIR5088 IL4I1 IRF3 FUZ MIR4751 PTOV1-AS1 MED25 RRAS MIR4749 MIR6800 ADM5 TSKS NUP62 BCL2L12 PTOV1-AS2 SCAF1 PTOV1 PRRG2 MIR6799 NOSIP AP2A1 |
nsv833864 | Chr.19:49551790 - 49733819 on Build GRCh38 | Gain | SCAF1 ADM5 PRRG2 PRR12 NOSIP PRMT1 RRAS CPT1C BCL2L12 MIR5088 IRF3 |
nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion | FCGRT SNORD35A PRR12 PRMT1 CPT1C MIR5088 IRF3 SNORD33 FUZ RCN3 RPS11 PTOV1-AS1 MED25 RRAS MIR6800 ADM5 SNORD35B SNORD32A TSKS BCL2L12 SCAF1 SNORD34 PRRG2 MIR150 MIR6799 NOSIP RPL13A AP2A1 |
nsv828578 | Chr.19:49560777 - 49680548 on Build GRCh38 | Loss | SCAF1 PRRG2 PRR12 NOSIP PRMT1 RRAS BCL2L12 IRF3 |
nsv579908 | Chr.19:49645135 - 49663393 on Build GRCh38 | Loss | SCAF1 IRF3 |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |