Assay Details
Target Gene Details
Entrez Gene ID: | 58191 |
Gene Name: | C-X-C motif chemokine ligand 16 |
Gene Aliases: |
CXCLG16, SR-PSOX, SRPSOX |
Location: |
Chr.17:4733529-4739928 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 2 - Intron 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
CXCL16 | NM_001100812.1 | NP_001094282.1 | ||
NM_022059.3 | NP_071342.2 | |||
AF275260.1 | AAG31750.1 | |||
AF301016.1 | AAG34365.1 | |||
AF337812.1 | AAK38275.1 | |||
AK027389.1 | BAB55078.1 | |||
AK292114.1 | ||||
AK315017.1 | ||||
AY358909.1 | AAQ89268.1 | |||
BC017588.1 | AAH17588.1 | |||
BC044930.1 | AAH44930.1 | |||
CA307348.1 | ||||
JC209418.1 | ||||
JC209420.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv574273 | Chr.17:4585589 - 5460332 on Build GRCh38 | Gain | MINK1 GP1BA LOC101559451 VMO1 LOC100130950 GLTPD2 SLC52A1 PSMB6 ARRB2 SLC25A11 SPAG7 ZFP3 PFN1 ENO3 LOC400568 LOC107984973 USP6 PLD2 RNF167 CHRNE KIF1C SCIMP C17orf107 CXCL16 MIR6864 LOC101927979 MIR6865 RPAIN ZNF232 DHX33 LOC101928000 INCA1 C1QBP CAMTA2 TM4SF5 MED11 NUP88 SMTNL2 RABEP1 ALOX15 ZNF594 LOC102724009 PELP1 ZMYND15 |
nsv833346 | Chr.17:4646256 - 4860871 on Build GRCh38 | Loss | MINK1 LOC101559451 CXCL16 VMO1 GLTPD2 PSMB6 ARRB2 TM4SF5 MED11 LOC107984973 PLD2 PELP1 ZMYND15 |
nsv1952 | Chr.17:4726245 - 4748889 on Build GRCh38 | Insertion | CXCL16 MED11 ZMYND15 |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |