Assay Details
Target Gene Details
Entrez Gene ID: | 338707 |
Gene Name: | beta-1,4-N-acetyl-galactosaminyltransferase 4 |
Gene Aliases: |
- |
Location: |
Chr.11:369773-382117 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 19 - Exon 20 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
B4GALNT4 | NM_178537.4 | NP_848632.2 | ||
XM_017017654.1 | XP_016873143.1 | |||
AB089939.1 | BAD06471.1 | |||
AK057774.1 | BAB71566.1 | |||
BC131528.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv527327 | Chr.11:295343 - 620599 on Build GRCh38 | Loss | IFITM3 RNH1 MIR210HG PKP3 IFITM2 LRRC56 B4GALNT4 PHRF1 IRF7 ANO9 LMNTD2 PGGHG CDHR5 PTDSS2 RASSF7 IFITM5 HRAS SIGIRR LOC101059906 IFITM1 MIR210 LOC143666 |
nsv469923 | Chr.11:378188 - 1302334 on Build GRCh38 | Loss | RNH1 DRD4 TOLLIP POLR2L MIR210HG LRRC56 EPS8L2 B4GALNT4 CRACR2B SCT MUC5AC ANO9 MIR6744 CDHR5 TALDO1 LOC101927503 PTDSS2 MUC5B AP2A2 MIR210 PANO1 LOC171391 PDDC1 LOC143666 SNORA52 CEND1 PKP3 MUC6 PHRF1 RPLP2 IRF7 SLC25A22 LMNTD2 MUC2 DEAF1 PIDD1 RASSF7 HRAS SIGIRR LOC101059906 CHID1 TMEM80 PNPLA2 TSPAN4 CD151 |
nsv552776 | Chr.11:366710 - 432436 on Build GRCh38 | Loss | PKP3 B4GALNT4 SIGIRR ANO9 |
esv28392 | Chr.11:363975 - 403432 on Build GRCh38 | Gain+Loss | PKP3 B4GALNT4 |
nsv951268 | Chr.11:368601 - 503700 on Build GRCh38 | Deletion | RNH1 PKP3 B4GALNT4 SIGIRR ANO9 PTDSS2 |
nsv552770 | Chr.11:356090 - 444628 on Build GRCh38 | Gain | PKP3 B4GALNT4 SIGIRR ANO9 |
dgv1505n54 | Chr.11:198510 - 470331 on Build GRCh38 | Gain | IFITM3 MIR6743 PKP3 IFITM2 B4GALNT4 NLRP6 ANO9 PSMD13 PGGHG PTDSS2 RIC8A IFITM5 SIGIRR IFITM1 ODF3 BET1L SIRT3 |
nsv1159790 | Chr.11:340219 - 491334 on Build GRCh38 | Deletion | PKP3 B4GALNT4 SIGIRR ANO9 PTDSS2 |
dgv182e199 | Chr.11:349830 - 943372 on Build GRCh38 | Deletion | RNH1 DRD4 POLR2L MIR210HG LRRC56 EPS8L2 B4GALNT4 CRACR2B SCT ANO9 CDHR5 TALDO1 PTDSS2 AP2A2 MIR210 PANO1 LOC171391 PDDC1 LOC143666 SNORA52 CEND1 PKP3 PHRF1 RPLP2 IRF7 SLC25A22 LMNTD2 DEAF1 PIDD1 RASSF7 HRAS SIGIRR LOC101059906 CHID1 TMEM80 PNPLA2 TSPAN4 CD151 |
dgv1507n54 | Chr.11:368778 - 382912 on Build GRCh38 | Loss | B4GALNT4 |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |