Assay Details
Target Gene Details
Entrez Gene ID: | 5786 |
Gene Name: | protein tyrosine phosphatase, receptor type A |
Gene Aliases: |
HEPTP, HLPR, HPTPA, HPTPalpha, LRP, PTPA, PTPRL2, R-PTP-alpha, RPTPA |
Location: |
Chr.20:2864195-3038669 on Build GRCh38 |
Assay Gene Location: | Within Intron 6 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
PTPRA | NM_002836.3 | NP_002827.1 | ||
NM_080840.2 | NP_543030.1 | |||
AB209702.1 | BAD92939.1 | |||
AK290233.1 | ||||
AK294499.1 | ||||
AK294990.1 | ||||
AK297293.1 | ||||
BC027308.1 | AAH27308.1 | |||
BI597187.1 | ||||
BQ213974.1 | ||||
BX571753.1 | CAE11878.1 | |||
M34668.1 | AAA36528.1 | |||
X54890.1 | CAA38662.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv3262 | Chr.20:2872560 - 2893089 on Build GRCh38 | Insertion | PTPRA |
esv3645020 | Chr.20:2816405 - 2926274 on Build GRCh38 | Gain | PTPRA PCED1A VPS16 TMEM239 |
nsv1057464 | Chr.20:2650623 - 2989686 on Build GRCh38 | Gain | CPXM1 PCED1A SNORA51 SNORD56 TMEM239 PTPRA C20orf141 SNORD110 SNORD86 IDH3B MIR1292 VPS16 SNORD57 EBF4 NOP56 |
nsv522009 | Chr.20:2745032 - 3030542 on Build GRCh38 | Gain | PTPRA C20orf141 CPXM1 PCED1A VPS16 TMEM239 EBF4 |
nsv833895 | Chr.20:2730164 - 2882236 on Build GRCh38 | Loss | PTPRA C20orf141 CPXM1 PCED1A VPS16 TMEM239 EBF4 |
esv2762056 | Chr.20:2740745 - 2944353 on Build GRCh38 | Gain | PTPRA C20orf141 CPXM1 PCED1A VPS16 TMEM239 EBF4 |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |