Assay Details
Target Gene Details
Entrez Gene ID: | 284415 |
Gene Name: | V-set and transmembrane domain containing 1 |
Gene Aliases: |
SIRL-1, SIRL1, UNQ3033 |
Location: |
Chr.19:54040825-54063966 on Build GRCh38 |
Assay Gene Location: | Within Intron 7 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
VSTM1 | NM_001288791.1 | NP_001275720.1 | ||
NM_001288792.1 | NP_001275721.1 | |||
NM_001288793.1 | NP_001275722.1 | |||
NM_198481.3 | NP_940883.2 | |||
NR_110142.1 | ||||
XM_011526845.1 | XP_011525147.1 | |||
XM_011526846.1 | XP_011525148.1 | |||
XM_011526847.1 | XP_011525149.1 | |||
XM_011526848.1 | XP_011525150.1 | |||
XM_011526849.1 | XP_011525151.1 | |||
XM_017026666.1 | XP_016882155.1 | |||
AY358542.1 | AAQ88906.1 | |||
BC100943.2 | AAI00944.1 | |||
BQ446114.1 | ||||
DQ479397.1 | ||||
FJ584316.1 | ||||
FJ584317.1 | ||||
FJ584318.1 | ||||
FJ584319.1 | ||||
FJ584320.1 | ||||
FJ882051.1 | ||||
FN398145.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv510773 | Chr.19:54017180 - 54132236 on Build GRCh38 | Deletion | PRPF31 OSCAR TARM1 VSTM1 NDUFA3 TFPT |
nsv580110 | Chr.19:53961144 - 54093354 on Build GRCh38 | Gain | TARM1 VSTM1 MIR935 CACNG6 CACNG8 |
nsv1057516 | Chr.19:53986233 - 54046901 on Build GRCh38 | Gain | VSTM1 CACNG6 CACNG8 |
nsv1063127 | Chr.19:53926876 - 54068977 on Build GRCh38 | Gain | VSTM1 CACNG7 MIR935 CACNG6 CACNG8 |
esv2718812 | Chr.19:53184636 - 54322450 on Build GRCh38 | Deletion | MIR518B MIR512-1 MIR517A MIR498 ZNF765 MIR525 MIR1283-2 CACNG6 MIR522 MBOAT7 MIR519D MIR517C MIR516B2 ZNF525 TPM3P9 MIR517B CACNG7 NDUFA3 MIR527 MIR526A2 MIR520G MIR512-2 MIR519E MIR373 MIR516A2 MIR519C LILRB3 PRPF31 ZNF845 MIR519A1 CNOT3 MIR523 MIR515-2 PRKCG ZNF761 MIR516B1 MIR521-2 LILRA5 LOC105372457 LOC284379 MIR516A1 DPRX LILRA6 TMC4 VSTM1 MIR935 ZNF331 MIR518C LILRB5 MIR371B TARM1 MIR521-1 LILRB2 NLRP12 TSEN34 MIR518E BIRC8 MIR371A VN1R2 MIR515-1 MIR372 MIR520D MIR526B MIR1283-1 MIR519B MIR520B ZNF818P FAM90A27P MYADM ZNF813 OSCAR MIR518A2 MIR518A1 MIR524 LENG1 VN1R4 MIR526A1 MIR520E MIR1323 MIR4752 MIR519A2 MIR520A MIR520C ZNF665 MIR518F MIR520F RPS9 MIR520H MIR518D CACNG8 ZNF677 TFPT |
nsv833877 | Chr.19:53951529 - 54117323 on Build GRCh38 | Loss | PRPF31 OSCAR TARM1 VSTM1 NDUFA3 MIR935 CACNG6 CACNG8 TFPT |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |