Assay Details
Target Gene Details
Entrez Gene ID: | 284415 |
Gene Name: | V-set and transmembrane domain containing 1 |
Gene Aliases: |
SIRL-1, SIRL1, UNQ3033 |
Location: |
Chr.19:54040825-54063966 on Build GRCh38 |
Assay Gene Location: | Within Intron 7 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
VSTM1 | NM_001288791.1 | NP_001275720.1 | ||
NM_001288792.1 | NP_001275721.1 | |||
NM_001288793.1 | NP_001275722.1 | |||
NM_198481.3 | NP_940883.2 | |||
NR_110142.1 | ||||
XM_011526845.1 | XP_011525147.1 | |||
XM_011526846.1 | XP_011525148.1 | |||
XM_011526847.1 | XP_011525149.1 | |||
XM_011526848.1 | XP_011525150.1 | |||
XM_011526849.1 | XP_011525151.1 | |||
XM_017026666.1 | XP_016882155.1 | |||
AY358542.1 | AAQ88906.1 | |||
BC100943.2 | AAI00944.1 | |||
BQ446114.1 | ||||
DQ479397.1 | ||||
FJ584316.1 | ||||
FJ584317.1 | ||||
FJ584318.1 | ||||
FJ584319.1 | ||||
FJ584320.1 | ||||
FJ882051.1 | ||||
FN398145.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv510773 | Chr.19:54017180 - 54132236 on Build GRCh38 | Deletion | OSCAR NDUFA3 VSTM1 PRPF31 TARM1 TFPT |
nsv580110 | Chr.19:53961144 - 54093354 on Build GRCh38 | Gain | CACNG6 MIR935 VSTM1 TARM1 CACNG8 |
nsv1063127 | Chr.19:53926876 - 54068977 on Build GRCh38 | Gain | CACNG7 CACNG6 MIR935 VSTM1 CACNG8 |
esv2718812 | Chr.19:53184636 - 54322450 on Build GRCh38 | Deletion | MIR527 ZNF818P ZNF665 MIR373 MIR935 MIR518A1 MIR1283-1 MIR525 MIR520E ZNF331 MIR518E MIR516B1 LILRB3 MIR516A2 MIR521-1 ZNF765 LILRB2 CACNG6 MIR515-2 PRPF31 MIR519E ZNF813 CACNG8 MIR517C MIR519B MIR519C MIR519D MIR520C ZNF677 LILRB5 MIR516A1 MIR1323 MIR518D MIR519A1 VSTM1 MIR372 MIR523 BIRC8 TFPT MIR518C MIR520D MYADM MIR526B LOC105372457 MIR520G LILRA5 ZNF845 RPS9 TPM3P9 MBOAT7 MIR515-1 MIR520B MIR517B NDUFA3 MIR522 NLRP12 MIR512-1 MIR498 MIR524 TSEN34 OSCAR MIR518F TMC4 MIR526A1 LENG1 LILRA6 MIR519A2 MIR512-2 CNOT3 CACNG7 MIR516B2 ZNF761 LOC284379 VN1R4 FAM90A27P MIR1283-2 MIR518B MIR521-2 TARM1 MIR371B MIR526A2 MIR371A MIR517A ZNF525 VN1R2 MIR520H MIR520A PRKCG MIR4752 MIR518A2 MIR520F DPRX |
nsv833877 | Chr.19:53951529 - 54117323 on Build GRCh38 | Loss | OSCAR NDUFA3 CACNG6 MIR935 VSTM1 PRPF31 TARM1 CACNG8 TFPT |
More Information
Additional Information:
For this assay, SNP(s) [rs72626273] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |