Assay Details
Target Gene Details
Entrez Gene ID: | 9328 |
Gene Name: | general transcription factor IIIC subunit 5 |
Gene Aliases: |
TFIIIC63, TFIIICepsilon, TFiiiC2-63 |
Location: |
Chr.9:133030675-133058503 on Build GRCh38 |
Assay Gene Location: | Within Intron 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
GTF3C5 | NM_001122823.1 | NP_001116295.1 | ||
NM_001286709.1 | NP_001273638.1 | |||
NM_012087.3 | NP_036219.2 | |||
XM_005272234.3 | XP_005272291.1 | |||
XM_011519201.1 | XP_011517503.1 | |||
XM_017015315.1 | XP_016870804.1 | |||
XM_017015316.1 | XP_016870805.1 | |||
AF133124.1 | AAD41476.1 | |||
AJ420443.1 | ||||
AK000194.1 | BAA91001.1 | |||
AK024510.1 | ||||
AK055092.1 | ||||
AK097295.1 | BAC04993.1 | |||
AK225761.1 | ||||
AK293980.1 | ||||
AK311481.1 | ||||
AY007123.1 | AAG01991.1 | |||
BC009741.2 | AAH09741.2 | |||
BC011355.1 | AAH11355.1 | |||
BC017337.2 | AAH17337.1 | |||
BC030157.2 | AAH30157.2 | |||
BQ673969.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2739138 | Chr.9:132727483 - 135521553 on Build GRCh38 | Deletion | MIR3689F GFI1B ADAMTSL2 REXO4 ADAMTS13 MIR3689D2 MIR3689A RNU6ATAC TSC1 DBH RALGDS MIR548AW BRD3 AK8 MIR3689E MED22 VAV2 CEL LCN1 MIR4669 SNORD24 COL5A1 MIR6877 SNORD36C LINC00094 SNORD36B LOC101928525 MRPS2 CELP SNORD36A GBGT1 OBP2B WDR5 LOC401557 FCN2 SPACA9 LOC101448202 OLFM1 MIR3689D1 STKLD1 FCN1 RPL7A GTF3C5 SURF6 SURF2 TMEM8C SLC2A6 MIR3689B LOC105376306 CACFD1 ABO FAM163B COL5A1-AS1 SURF4 PPP1R26-AS1 RXRA SURF1 DBH-AS1 PPP1R26 SARDH C9orf62 LOC101928193 MIR3689C SNORD141A LOC100996574 C9orf116 LOC100130548 |
nsv6746 | Chr.9:133044293 - 133068877 on Build GRCh38 | Insertion | MIR6877 LOC100996574 GTF3C5 CEL |
nsv615596 | Chr.9:133030314 - 133080285 on Build GRCh38 | Loss | MIR6877 LOC105376306 LOC100996574 GTF3C5 CEL |
nsv831744 | Chr.9:132980050 - 133174043 on Build GRCh38 | Gain+Loss | MIR6877 GFI1B RALGDS LOC105376306 SNORD141A LOC100996574 GTF3C5 CELP CEL GBGT1 |
nsv508564 | Chr.9:133013830 - 133073076 on Build GRCh38 | Deletion | MIR6877 LOC105376306 SNORD141A LOC100996574 GTF3C5 CEL |
More Information
Additional Information:
For this assay, SNP(s) [rs112561557] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |