Assay Details
Target Gene Details
Entrez Gene ID: | 401494 |
Gene Name: | 3-hydroxyacyl-CoA dehydratase 4 |
Gene Aliases: |
PTPLAD2 |
Location: |
Chr.9:21003621-21031712 on Build GRCh38 |
Assay Gene Location: | Within Intron 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
HACD4 | NM_001010915.4 | NP_001010915.2 | ||
NM_001321883.1 | NP_001308812.1 | |||
NM_001321903.1 | NP_001308832.1 | |||
XM_017014713.1 | XP_016870202.1 | |||
XM_017014714.1 | XP_016870203.1 | |||
BC114215.1 | AAI14216.1 | |||
BX648779.1 | ||||
DA333010.1 | ||||
HY118500.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv1017312 | Chr.9:20892953 - 21122463 on Build GRCh38 | Gain | FOCAD HACD4 IFNB1 |
esv2764150 | Chr.9:20659506 - 22349184 on Build GRCh38 | Gain+Loss | CDKN2B IFNW1 CDKN2A-AS1 ERVFRD-3 IFNA5 FOCAD IFNA22P IFNA21 MIR31 CDKN2A IFNA10 IFNA8 IFNA6 IFNA17 IFNA1 KLHL9 IFNE FOCAD-AS1 MTAP IFNA14 IFNA7 IFNA13 IFNA4 IFNB1 MIR491 CDKN2B-AS1 IFNA16 MIR31HG HACD4 IFNA2 |
nsv613752 | Chr.9:21029331 - 21199681 on Build GRCh38 | Loss | IFNW1 IFNA21 IFNA4 HACD4 IFNB1 |
nsv1161847 | Chr.9:21006309 - 21091241 on Build GRCh38 | Deletion | HACD4 IFNB1 |
More Information
Additional Information:
For this assay, SNP(s) [rs115848137] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |