Assay Details
Target Gene Details
Entrez Gene ID: | 49856 |
Gene Name: | WD repeat containing, antisense to TP73 |
Gene Aliases: |
WDR8 |
Location: |
Chr.1:3630767-3650107 on Build GRCh38 |
Assay Gene Location: | Within Intron 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
WRAP73 | NM_017818.3 | NP_060288.3 | ||
XM_005244754.1 | XP_005244811.1 | |||
XM_017001387.1 | XP_016856876.1 | |||
AB034912.1 | BAA92312.1 | |||
AK000437.1 | BAA91164.1 | |||
AK225525.1 | ||||
AK302397.1 | ||||
BC086311.1 | AAH86311.1 | |||
DC380547.1 | ||||
EF494669.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv410 | Chr.1:3635087 - 3667080 on Build GRCh38 | Insertion | TP73 WRAP73 |
nsv470687 | Chr.1:3356499 - 3763210 on Build GRCh38 | Loss | TP73 TP73-AS1 TPRG1L WRAP73 CCDC27 MIR551A ARHGEF16 MEGF6 PRDM16 |
nsv545128 | Chr.1:3630371 - 3700037 on Build GRCh38 | Loss | TP73 WRAP73 |
nsv1001715 | Chr.1:3627619 - 3769754 on Build GRCh38 | Loss | TP73 TP73-AS1 TPRG1L WRAP73 CCDC27 |
esv3585042 | Chr.1:3585575 - 4260083 on Build GRCh38 | Gain | SMIM1 C1orf174 TP73-AS1 DFFB LINC01346 LINC01134 TP73 LRRC47 CEP104 TPRG1L WRAP73 CCDC27 MEGF6 |
nsv1012423 | Chr.1:3477686 - 4747449 on Build GRCh38 | Gain | SMIM1 LOC284661 C1orf174 TP73-AS1 DFFB LINC01346 LINC01134 ARHGEF16 TP73 LRRC47 CEP104 TPRG1L WRAP73 CCDC27 MIR551A AJAP1 MEGF6 |
nsv951959 | Chr.1:3051037 - 3812036 on Build GRCh38 | Deletion | SMIM1 TP73-AS1 LOC105378604 MIR4251 ARHGEF16 PRDM16 TP73 LRRC47 TPRG1L WRAP73 LINC00982 CCDC27 MIR551A MEGF6 |
esv3585045 | Chr.1:3611161 - 3686920 on Build GRCh38 | Gain | TP73 TPRG1L WRAP73 MEGF6 |
More Information
Additional Information:
For this assay, SNP(s) [rs114491188] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |