Hs06539974_cn

• Gene Symbol: GPATCH2
• Assay Reference Genome Location: Chr.1:217453930 on build GRCh38
• Cytoband: 1q41

Target Gene Details

• Entrez Gene ID: 55105
• Gene Name: G-patch domain containing 2
• Gene Aliases: CT110, GPATC2, PPP1R30
• Location: Chr.1:217426992-217631312 on Build GRCh38
• Assay Gene Location: Within Intron 11

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
GPATCH2	NM_018040.3			NP_060510.1
	XM_011509689.2			XP_011507991.1
	XM_011509690.2			XP_011507992.1
	XM_011509691.2			XP_011507993.1
	XM_011509693.2			XP_011507995.1
	XM_017001592.1			XP_016857081.1
	AK001114.1			BAA91509.1
	AK024701.1
	AK310304.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv832559	Chr.1:217305459 - 217482303 on Build GRCh38	Loss	GPATCH2
esv2762164	Chr.1:217216609 - 217569408 on Build GRCh38	Gain	GPATCH2
nsv832570	Chr.1:217402639 - 217576576 on Build GRCh38	Gain	GPATCH2
nsv1008328	Chr.1:217300400 - 217602339 on Build GRCh38	Gain	GPATCH2

More Information

Additional Information:

For this assay, SNP(s) [rs115925313] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

RNA metabolism protein

Gene Ontology Categories:

Process(es)

negative regulation of phosphatase activity

Function(s)

nucleic acid binding