Assay Details
Target Gene Details
Entrez Gene ID: | 84690 |
Gene Name: | spermatogenesis associated 22 |
Gene Aliases: |
NYD-SP20, NYDSP20 |
Location: |
Chr.17:3440011-3513852 on Build GRCh38 |
Assay Gene Location: | Within Intron 6 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SPATA22 | NM_001170695.1 | NP_001164166.1 | ||
NM_001170696.1 | NP_001164167.1 | |||
NM_001170697.1 | NP_001164168.1 | |||
NM_001170698.1 | NP_001164169.1 | |||
NM_001170699.1 | NP_001164170.1 | |||
NM_001321336.1 | NP_001308265.1 | |||
NM_001321337.1 | NP_001308266.1 | |||
NM_032598.4 | NP_115987.2 | |||
AF367472.1 | AAK53408.1 | |||
AK295299.1 | ||||
AK301892.1 | ||||
AY032684.1 | AAK51120.1 | |||
AY035867.1 | AAK61373.1 | |||
AY035868.1 | AAK61374.1 | |||
BC029483.1 | AAH29483.1 | |||
BG716998.1 | ||||
BI463957.1 | ||||
BP371122.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv3892950 | Chr.17:3131812 - 3577153 on Build GRCh38 | Loss | OR1E1 OR1A2 OR3A2 TRPV1 OR3A3 OR3A1 ASPA OR1D4 OR1E2 TRPV3 OR1A1 OR3A4P SPATA22 |
nsv1065489 | Chr.17:2631416 - 3948349 on Build GRCh38 | Gain | SHPK RAP1GAP2 OR1E1 OR1D5 P2RX5-TAX1BP3 OR1A2 OR3A2 P2RX1 LOC101927911 OR3A3 P2RX5 ASPA OR1E2 TRPV3 CAMKK1 ITGAE SPATA22 CLUH LOC105371592 OR1G1 CCDC92B OR1D2 TRPV1 LOC105371591 TAX1BP3 OR3A1 EMC6 PAFAH1B1 GSG2 CTNS NCBP3 MIR6776 OR1D4 ATP2A3 MIR1253 OR1A1 OR3A4P |
nsv574232 | Chr.17:3254715 - 3503170 on Build GRCh38 | Gain | OR3A3 OR3A1 OR1E1 OR3A2 ASPA OR1E2 OR3A4P SPATA22 |
esv2660206 | Chr.17:2679367 - 3519614 on Build GRCh38 | Deletion | CLUH RAP1GAP2 OR1E1 LOC105371592 OR1D5 OR1G1 OR1A2 OR3A2 CCDC92B OR1D2 LOC101927911 LOC105371591 OR3A3 OR3A1 PAFAH1B1 MIR6776 ASPA OR1D4 OR1E2 MIR1253 TRPV3 OR1A1 OR3A4P SPATA22 |
nsv1055740 | Chr.17:3381841 - 3890153 on Build GRCh38 | Gain | SHPK OR1E1 P2RX5-TAX1BP3 OR3A2 TRPV1 TAX1BP3 OR3A3 EMC6 P2RX5 GSG2 CTNS NCBP3 ASPA OR1E2 TRPV3 CAMKK1 ITGAE SPATA22 |
nsv528368 | Chr.17:3459775 - 3507608 on Build GRCh38 | Gain | ASPA SPATA22 |
nsv521277 | Chr.17:3390044 - 3468885 on Build GRCh38 | Gain | OR3A3 OR1E1 OR1E2 SPATA22 |
nsv833341 | Chr.17:3352243 - 3521390 on Build GRCh38 | Loss | OR3A3 OR1E1 OR3A2 ASPA OR1E2 TRPV3 SPATA22 |
nsv1060071 | Chr.17:3398474 - 3633472 on Build GRCh38 | Loss | OR3A3 SHPK ASPA OR1E2 TRPV3 TRPV1 SPATA22 |
More Information
Additional Information:
For this assay, SNP(s) [rs73977731] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |