Assay Details
Target Gene Details
Entrez Gene ID: | 838 |
Gene Name: | caspase 5 |
Gene Aliases: |
ICE(rel)III, ICEREL-III, ICH-3 |
Location: |
Chr.11:104994240-105023902 on Build GRCh38 |
Assay Gene Location: | Within Intron 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
CASP5 | NM_001136109.1 | NP_001129581.1 | ||
NM_001136110.1 | NP_001129582.1 | |||
NM_001136112.1 | NP_001129584.1 | |||
NM_004347.3 | NP_004338.3 | |||
NR_024239.1 | ||||
NR_036562.1 | ||||
XM_011543021.2 | XP_011541323.1 | |||
AK296660.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv556219 | Chr.11:105004534 - 105047790 on Build GRCh38 | Loss | CARD16 CASP5 CASP1 |
nsv1052674 | Chr.11:104111970 - 107043401 on Build GRCh38 | Loss | CASP12 LOC105369473 GRIA4 CASP5 KBTBD3 PDGFD CASP1 CARD17 CASP1P2 LOC102723895 CARD16 AASDHPPT LOC101928535 LOC643733 MIR7641-1 CARD18 GUCY1A2 CASP4 MSANTD4 |
esv2750978 | Chr.11:104094062 - 105475331 on Build GRCh38 | Gain | LOC102723895 CARD16 CASP12 CASP5 LOC643733 MIR7641-1 PDGFD CARD18 CASP1 CARD17 CASP4 CASP1P2 |
nsv1046098 | Chr.11:104336482 - 105132934 on Build GRCh38 | Loss | LOC102723895 CARD16 CASP12 CASP5 LOC643733 CASP1 CARD17 CASP4 CASP1P2 |
nsv1041081 | Chr.11:104927048 - 105041731 on Build GRCh38 | Loss | CARD16 CASP5 CASP1 CASP4 |
nsv468862 | Chr.11:104903287 - 105372644 on Build GRCh38 | Gain | CARD16 CASP5 LOC643733 CARD18 CASP1 CARD17 CASP4 CASP1P2 |
nsv1038877 | Chr.11:104166130 - 105422422 on Build GRCh38 | Gain | LOC102723895 CARD16 CASP12 CASP5 LOC643733 MIR7641-1 CARD18 CASP1 CARD17 CASP4 CASP1P2 |
More Information
Additional Information:
For this assay, SNP(s) [rs76840823] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |