Hs06116006_cn

• Gene Symbol: HAVCR1
• Assay Reference Genome Location: Chr.5:156995376 on build GRCh38
• Cytoband: 5q33.3

Target Gene Details

• Entrez Gene ID: 26762
• Gene Name: hepatitis A virus cellular receptor 1
• Gene Aliases: CD365, HAVCR, HAVCR-1, KIM-1, KIM1, TIM, TIM-1, TIM1, TIMD-1, TIMD1
• Location: Chr.5:156979443-157059119 on Build GRCh38
• Assay Gene Location: Within Intron 10

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
HAVCR1	XM_017009340.1			XP_016864829.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv1009526	Chr.5:156993570 - 157000957 on Build GRCh38	Deletion	HAVCR1
esv3607302	Chr.5:156839545 - 157055054 on Build GRCh38	Gain	PPP1R2P3 TIMD4 HAVCR1
dgv1661e212	Chr.5:156994435 - 156999652 on Build GRCh38	Loss	HAVCR1
esv3607306	Chr.5:156969763 - 157052820 on Build GRCh38	Gain	HAVCR1
esv1004108	Chr.5:156994448 - 156998621 on Build GRCh38	Loss	HAVCR1
esv3607307	Chr.5:156994838 - 157000033 on Build GRCh38	Loss	HAVCR1
esv3575892	Chr.5:156975204 - 157220778 on Build GRCh38	Gain	FAM71B HAVCR2 ITK MED7 HAVCR1
esv2667486	Chr.5:156994839 - 156999948 on Build GRCh38	Deletion	HAVCR1
esv3566863	Chr.5:156994806 - 157000186 on Build GRCh38	Deletion	HAVCR1

More Information

Additional Information:

For this assay, SNP(s) [rs116364340] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

viral entry into host cell

Function(s)

virus receptor activity