Assay Details
Target Gene Details
Entrez Gene ID: | 51294 |
Gene Name: | protocadherin 12 |
Gene Aliases: |
VE-cadherin-2, VECAD2 |
Location: |
Chr.5:141943585-141959062 on Build GRCh38 |
Assay Gene Location: | Within Intron 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
PCDH12 | NM_016580.3 | NP_057664.1 | ||
AB026893.1 | BAA95162.1 | |||
AF231025.1 | AAF61931.1 | |||
AF240635.1 | AAF73962.1 | |||
AK023785.1 | BAB14677.1 | |||
AK024140.1 | BAB14837.1 | |||
AK027282.1 | BAB55016.1 | |||
AK226049.1 | ||||
AK315029.1 | ||||
AY358428.1 | AAQ88794.1 | |||
BC042634.1 | AAH42634.1 | |||
BC052973.1 | AAH52973.1 |
Target Gene Details
Entrez Gene ID: | 9604 |
Gene Name: | ring finger protein 14 |
Gene Aliases: |
ARA54, HFB30, HRIHFB2038, TRIAD2 |
Location: |
Chr.5:141949337-141993709 on Build GRCh38 |
Assay Gene Location: | Within Intron 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
RNF14 | XM_017010070.1 | XP_016865559.1 | ||
XM_017010076.1 | XP_016865565.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv1154058 | Chr.5:141632251 - 142199943 on Build GRCh38 | Deletion | RNF14 PCDH12 PCDH1 FCHSD1 NDFIP1 RELL2 GNPDA1 KIAA0141 ARAP3 HDAC3 LOC729080 |
nsv599924 | Chr.5:141919412 - 141955933 on Build GRCh38 | Gain | RNF14 PCDH12 KIAA0141 |
More Information
Additional Information:
For this assay, SNP(s) [rs116234707] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |