Assay Details
Target Gene Details
Entrez Gene ID: | 348932 |
Gene Name: | solute carrier family 6 member 18 |
Gene Aliases: |
Xtrp2 |
Location: |
Chr.5:1225355-1246189 on Build GRCh38 |
Assay Gene Location: | Within Intron 4 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SLC6A18 | NM_182632.2 | NP_872438.2 | ||
AK055798.1 | BAB71018.1 | |||
AK298257.1 | ||||
BC056757.1 | AAH56757.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv1024507 | Chr.5:1232783 - 1269250 on Build GRCh38 | Gain | SLC6A18 TERT |
nsv1033961 | Chr.5:1128595 - 1248239 on Build GRCh38 | Gain | CTD-3080P12.3 SLC6A19 SLC6A18 SLC12A7 |
esv3575810 | Chr.5:1055511 - 1282578 on Build GRCh38 | Gain | CTD-3080P12.3 SLC6A19 MIR4635 SLC6A18 TERT SLC12A7 |
dgv1066e214 | Chr.5:1227977 - 1245183 on Build GRCh38 | Loss | SLC6A18 |
nsv509044 | Chr.5:1147636 - 1265572 on Build GRCh38 | Insertion | CTD-3080P12.3 SLC6A19 SLC6A18 TERT SLC12A7 |
nsv950627 | Chr.5:1008886 - 1300685 on Build GRCh38 | Deletion | CTD-3080P12.3 NKD2 SLC6A19 MIR4635 SLC6A18 TERT SLC12A7 |
nsv596629 | Chr.5:457146 - 1468172 on Build GRCh38 | Gain | CTD-3080P12.3 NKD2 SLC6A19 BRD9 TRIP13 TERT SLC9A3 MIR4456 LOC100506688 LPCAT1 MIR4457 PP7080 ZDHHC11B LOC100996325 MIR4635 EXOC3 SLC6A18 SLC6A3 SLC12A7 ZDHHC11 LOC101929895 TPPP CLPTM1L CEP72 LINC01511 LOC100288152 |
esv3603797 | Chr.5:1086744 - 1259707 on Build GRCh38 | Gain | CTD-3080P12.3 SLC6A19 SLC6A18 TERT SLC12A7 |
More Information
Additional Information:
For this assay, SNP(s) [rs115806907] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |