Assay Details
Target Gene Details
Entrez Gene ID: | 84690 |
Gene Name: | spermatogenesis associated 22 |
Gene Aliases: |
NYD-SP20, NYDSP20 |
Location: |
Chr.17:3440011-3513852 on Build GRCh38 |
Assay Gene Location: | Within Intron 8 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SPATA22 | NM_001170695.1 | NP_001164166.1 | ||
NM_001170696.1 | NP_001164167.1 | |||
NM_001170697.1 | NP_001164168.1 | |||
NM_001170698.1 | NP_001164169.1 | |||
NM_001170699.1 | NP_001164170.1 | |||
NM_001321336.1 | NP_001308265.1 | |||
NM_001321337.1 | NP_001308266.1 | |||
NM_032598.4 | NP_115987.2 | |||
AF367472.1 | AAK53408.1 | |||
AK295299.1 | ||||
AK301892.1 | ||||
AY032684.1 | AAK51120.1 | |||
AY035867.1 | AAK61373.1 | |||
AY035868.1 | AAK61374.1 | |||
BC029483.1 | AAH29483.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv3892950 | Chr.17:3131812 - 3577153 on Build GRCh38 | Loss | ASPA SPATA22 OR3A3 OR3A4P TRPV3 TRPV1 OR1E2 OR1A1 OR3A1 OR1A2 OR1D4 OR1E1 OR3A2 |
nsv1065489 | Chr.17:2631416 - 3948349 on Build GRCh38 | Gain | EMC6 OR1G1 GSG2 P2RX5 LOC101927911 ATP2A3 OR3A4P CLUH TRPV1 OR1D2 OR1A1 CCDC92B OR1D4 P2RX5-TAX1BP3 MIR1253 OR1E1 OR3A2 TAX1BP3 ASPA NCBP3 LOC105371591 RAP1GAP2 SPATA22 OR1D5 P2RX1 OR3A3 ITGAE MIR6776 SHPK TRPV3 LOC105371592 CAMKK1 OR1E2 OR3A1 OR1A2 CTNS PAFAH1B1 |
nsv574232 | Chr.17:3254715 - 3503170 on Build GRCh38 | Gain | ASPA OR1E2 OR3A1 SPATA22 OR3A3 OR3A4P OR1E1 OR3A2 |
esv2660206 | Chr.17:2679367 - 3519614 on Build GRCh38 | Deletion | OR1G1 ASPA LOC105371591 RAP1GAP2 LOC101927911 SPATA22 OR1D5 OR3A3 MIR6776 OR3A4P TRPV3 LOC105371592 CLUH OR1D2 OR1E2 OR1A1 OR3A1 OR1A2 CCDC92B OR1D4 PAFAH1B1 MIR1253 OR1E1 OR3A2 |
nsv1055740 | Chr.17:3381841 - 3890153 on Build GRCh38 | Gain | EMC6 TAX1BP3 ASPA GSG2 NCBP3 P2RX5 SPATA22 OR3A3 ITGAE SHPK TRPV3 CAMKK1 TRPV1 OR1E2 CTNS P2RX5-TAX1BP3 OR1E1 OR3A2 |
nsv521277 | Chr.17:3390044 - 3468885 on Build GRCh38 | Gain | OR1E2 SPATA22 OR3A3 OR1E1 |
nsv833341 | Chr.17:3352243 - 3521390 on Build GRCh38 | Loss | TRPV3 ASPA OR1E2 SPATA22 OR3A3 OR1E1 OR3A2 |
nsv1060071 | Chr.17:3398474 - 3633472 on Build GRCh38 | Loss | TRPV3 TRPV1 ASPA OR1E2 SPATA22 OR3A3 SHPK |
nsv1059413 | Chr.17:3365789 - 3453922 on Build GRCh38 | Loss | OR1E2 SPATA22 OR3A3 OR1E1 OR3A2 |
More Information
Additional Information:
For this assay, SNP(s) [rs73297714] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |