Assay Details
Target Gene Details
Entrez Gene ID: | 144108 |
Gene Name: | SPT2 chromatin protein domain containing 1 |
Gene Aliases: |
Spt2 |
Location: |
Chr.11:18606401-18634823 on Build GRCh38 |
Assay Gene Location: | Within Intron 4 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SPTY2D1 | NM_194285.2 | NP_919261.2 | ||
XM_011519919.2 | XP_011518221.1 | |||
AF452716.1 | AAP13351.1 | |||
AK096760.1 | BAC04858.1 | |||
AK304078.1 | ||||
BC036844.1 | AAH36844.1 | |||
BC056261.1 | AAH56261.1 | |||
BX538046.1 | CAD97985.1 | |||
BX641102.1 | CAE46047.1 | |||
BX647798.1 | ||||
BX648114.1 | CAH10772.1 | |||
BX648478.1 | ||||
CR749626.1 | CAH18420.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv553633 | Chr.11:18290154 - 19036904 on Build GRCh38 | Gain | SPTY2D1 LDHAL6A IGSF22 LDHC HPS5 PTPN5 SPTY2D1-AS1 LDHA TMEM86A MIR3159 TSG101 GTF2H1 MRGPRX1 UEVLD |
nsv516413 | Chr.11:18606871 - 18622211 on Build GRCh38 | Loss | SPTY2D1 SPTY2D1-AS1 |
More Information
Additional Information:
For this assay, SNP(s) [rs74560026] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |