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Gene Symbol
PCDH15
Assay Reference Genome
Location

Chr.10:53824551 on build GRCh38
Cytoband
10q21.1
Assay ID Hs05163598_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 65217

Gene Name:

 protocadherin related 15

Gene Aliases:

 CDHR15, DFNB23, USH1F

Location:

 Chr.10:53802771-55629182 on Build GRCh38

Assay Gene Location:

 Within Intron 41
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PCDH15 NM_001142763.1 NP_001136235.1
NM_001142764.1 NP_001136236.1
NM_001142765.1 NP_001136237.1
NM_001142766.1 NP_001136238.1
NM_001142767.1 NP_001136239.1
NM_001142768.1 NP_001136240.1
NM_001142769.1 NP_001136241.1
NM_001142770.1 NP_001136242.1
NM_001142771.1 NP_001136243.1
NM_001142772.1 NP_001136244.1
NM_001142773.1 NP_001136245.1
NM_033056.3 NP_149045.3
XM_017016571.1 XP_016872060.1
XM_017016572.1 XP_016872061.1
XM_017016573.1 XP_016872062.1
AK126923.1
AY029205.1 AAK31581.1
AY029237.1 AAK31804.1
AY388963.1 AAR26468.1
EU718480.1
EU718481.1
EU718482.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1041917 Chr.10:52741572 - 55682853 on Build GRCh38 Loss MTRNR2L5 MBL2 PCDH15 LOC105378311 MIR548F1
esv2750962 Chr.10:52972795 - 55555375 on Build GRCh38 Loss PCDH15 LOC105378311 MIR548F1
esv2759753 Chr.10:53597376 - 53827170 on Build GRCh38 Loss PCDH15
dgv1146n54 Chr.10:53034448 - 54727838 on Build GRCh38 Loss PCDH15 LOC105378311 MIR548F1

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More Information


Additional Information:

For this assay, SNP(s) [rs138619045] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Function(s) Process(es)


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