Assay Details
Target Gene Details
Entrez Gene ID: | 9734 |
Gene Name: | histone deacetylase 9 |
Gene Aliases: |
HD7, HD7b, HD9, HDAC, HDAC7, HDAC7B, HDAC9B, HDAC9FL, HDRP, MITR |
Location: |
Chr.7:18086942-19003745 on Build GRCh38 |
Assay Gene Location: | Within Intron 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
HDAC9 | NM_001204144.2 | NP_001191073.1 | ||
NM_001321868.1 | NP_001308797.1 | |||
NM_001321869.1 | NP_001308798.1 | |||
NM_001321870.1 | NP_001308799.1 | |||
NM_001321871.1 | NP_001308800.1 | |||
NM_001321872.1 | NP_001308801.1 | |||
NM_001321873.1 | NP_001308802.1 | |||
XM_011515631.2 | XP_011513933.1 | |||
AK304298.1 | ||||
DC333353.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv1022746 | Chr.7:17938480 - 18193835 on Build GRCh38 | Gain | SNX13 MIR1302-6 HDAC9 PRPS1L1 |
nsv606357 | Chr.7:17898868 - 18335622 on Build GRCh38 | Gain | SNX13 MIR1302-6 HDAC9 PRPS1L1 |
nsv606358 | Chr.7:18045220 - 18376474 on Build GRCh38 | Gain | MIR1302-6 HDAC9 |
nsv1025023 | Chr.7:17826173 - 18318007 on Build GRCh38 | Gain | SNX13 MIR1302-6 HDAC9 PRPS1L1 |
nsv1027814 | Chr.7:18104576 - 18155276 on Build GRCh38 | Gain | MIR1302-6 HDAC9 |
More Information
Additional Information:
For this assay, SNP(s) [rs116122601] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |