Assay Details
Target Gene Details
Entrez Gene ID: | 29855 |
Gene Name: | ubinuclein 1 |
Gene Aliases: |
VT, VT4 |
Location: |
Chr.16:4846665-4882401 on Build GRCh38 |
Assay Gene Location: | Within Intron 7 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
UBN1 | NM_001079514.2 | NP_001072982.1 | ||
NM_001288656.1 | NP_001275585.1 | |||
XM_005255277.3 | XP_005255334.1 | |||
XM_005255278.3 | XP_005255335.1 | |||
XM_005255279.3 | XP_005255336.1 | |||
XM_011522465.1 | XP_011520767.1 | |||
XM_011522466.2 | XP_011520768.1 | |||
XM_011522467.1 | XP_011520769.1 | |||
XM_017023189.1 | XP_016878678.1 | |||
XM_017023190.1 | XP_016878679.1 | |||
XM_017023191.1 | XP_016878680.1 | |||
XM_017023192.1 | XP_016878681.1 | |||
AF108460.1 | AAF31755.1 | |||
AF108461.1 | AAF31756.1 | |||
AK300131.1 | ||||
U19346.1 | AAA64188.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv25186 | Chr.16:4858500 - 5142800 on Build GRCh38 | Gain | NAGPA SEC14L5 EEF2KMT ALG1 PPL C16orf89 UBN1 NAGPA-AS1 |
esv2422516 | Chr.16:4775920 - 5160979 on Build GRCh38 | Deletion | NAGPA SEC14L5 EEF2KMT SMIM22 ALG1 PPL ROGDI C16orf89 UBN1 NAGPA-AS1 SEPT12 GLYR1 |
nsv510674 | Chr.16:4832446 - 4882731 on Build GRCh38 | Deletion | PPL UBN1 GLYR1 |
nsv1046986 | Chr.16:4049000 - 5555721 on Build GRCh38 | Gain | EEF2KMT PAM16 LOC105371063 LINC01569 C16orf89 SEPT12 SMIM22 ALG1 DNAJA3 ZNF500 TFAP4 C16orf71 MGRN1 CORO7-PAM16 ANKS3 GLIS2 C16orf96 NAGPA SRL HMOX2 MIR6769A PPL ADCY9 NMRAL1 CDIP1 NUDT16L1 GLYR1 SEC14L5 CORO7 UBALD1 ROGDI UBN1 GLIS2-AS1 NAGPA-AS1 VASN RBFOX1 |
esv3637707 | Chr.16:4823818 - 4874308 on Build GRCh38 | Gain | UBN1 GLYR1 |
nsv1720 | Chr.16:4854258 - 4900577 on Build GRCh38 | Deletion | PPL UBN1 |
More Information
Additional Information:
For this assay, SNP(s) [rs74003520] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |